miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 44334 0.7 0.698133
Target:  5'- -cCCUCgacgGCCaCGCCGCGGGGccgguaggccACCCCCu -3'
miRNA:   3'- uuGGAG----UGG-GUGGUGCCUU----------UGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 19482 0.71 0.62929
Target:  5'- cGCCUC-CCCGCCGCGu---UCCCCAc -3'
miRNA:   3'- uUGGAGuGGGUGGUGCcuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 118783 0.71 0.63819
Target:  5'- cGCCUC-CgCCGCCggGCGGGAgcuguggGCCCCCGu -3'
miRNA:   3'- uUGGAGuG-GGUGG--UGCCUU-------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 80127 0.7 0.668781
Target:  5'- cGCCUgGUCCAUCGCGGGGucguCCCCCu -3'
miRNA:   3'- uUGGAgUGGGUGGUGCCUUu---GGGGGu -5'
9047 3' -58.4 NC_002512.2 + 10023 0.7 0.678603
Target:  5'- cGGCCUCgucACCCGuCCGCGauccGCCCCCGg -3'
miRNA:   3'- -UUGGAG---UGGGU-GGUGCcuu-UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 62650 0.7 0.688389
Target:  5'- gGACCUCucGCCCGaucCCGCGGAAGCCgaCGa -3'
miRNA:   3'- -UUGGAG--UGGGU---GGUGCCUUUGGggGU- -5'
9047 3' -58.4 NC_002512.2 + 75497 0.7 0.697161
Target:  5'- cGCCUCcgacgggggcgggACUuuCGCCGCGGAAGCCgCCAu -3'
miRNA:   3'- uUGGAG-------------UGG--GUGGUGCCUUUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 7513 0.7 0.698133
Target:  5'- gAGCCagaGCCCGCCGgGGAAggcgGCCCCg- -3'
miRNA:   3'- -UUGGag-UGGGUGGUgCCUU----UGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 91616 0.7 0.698133
Target:  5'- cACCUgcaggGCCC-CCGCGGGGAUCUCCAg -3'
miRNA:   3'- uUGGAg----UGGGuGGUGCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 40169 0.71 0.62929
Target:  5'- uGCCUC-CCCACCGCcccGAcauCCCCCGg -3'
miRNA:   3'- uUGGAGuGGGUGGUGc--CUuu-GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 98545 0.71 0.598682
Target:  5'- gGACCUCGCCCGgcguuCCGCGGAuccggcgGGCgCCUCGg -3'
miRNA:   3'- -UUGGAGUGGGU-----GGUGCCU-------UUG-GGGGU- -5'
9047 3' -58.4 NC_002512.2 + 36190 0.71 0.596713
Target:  5'- cGACCUCcaucgucccccgggACCgACUGCGGGAGCCCUCc -3'
miRNA:   3'- -UUGGAG--------------UGGgUGGUGCCUUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 39003 0.75 0.38942
Target:  5'- cGCCUCGCCCcgcgaCGCGGGgaaAGCCCCCc -3'
miRNA:   3'- uUGGAGUGGGug---GUGCCU---UUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 28049 0.73 0.493957
Target:  5'- gAGCU--GCCgGCCGCGGAAggaGCCCCCGg -3'
miRNA:   3'- -UUGGagUGGgUGGUGCCUU---UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 72740 0.73 0.50326
Target:  5'- cGGCCcgcCGCCCGCCcCGGGcccgccgccGACCCCCGa -3'
miRNA:   3'- -UUGGa--GUGGGUGGuGCCU---------UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 64229 0.72 0.531607
Target:  5'- gGACCUCGgCCugCG-GGAAgGCCCCCGa -3'
miRNA:   3'- -UUGGAGUgGGugGUgCCUU-UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 70837 0.72 0.531607
Target:  5'- cGCCUCGCCCcgggacgagauGCCGCGGAGAagucgucgguCCgCCCGg -3'
miRNA:   3'- uUGGAGUGGG-----------UGGUGCCUUU----------GG-GGGU- -5'
9047 3' -58.4 NC_002512.2 + 134103 0.72 0.550822
Target:  5'- -cCCggCGCCUACCGCucGGAcGCCCCCGu -3'
miRNA:   3'- uuGGa-GUGGGUGGUG--CCUuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 15965 0.72 0.56051
Target:  5'- cGACUcgCACUCGCCGCGGucgaucuCCCCCGg -3'
miRNA:   3'- -UUGGa-GUGGGUGGUGCCuuu----GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 63079 0.72 0.56051
Target:  5'- cGCUUCGCCCACCACc---ACCUCCAg -3'
miRNA:   3'- uUGGAGUGGGUGGUGccuuUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.