miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 201806 0.66 0.856739
Target:  5'- cGACCUCuccgccgucuccGCCgCGCC-CGGggGCUCCUu -3'
miRNA:   3'- -UUGGAG------------UGG-GUGGuGCCuuUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 61758 0.66 0.856739
Target:  5'- cAGCC-C-CUCGCCGCGGccGGGCCCCUc -3'
miRNA:   3'- -UUGGaGuGGGUGGUGCC--UUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 93543 0.66 0.856739
Target:  5'- cGACCg-ACCCGCgACGGGGACCUg-- -3'
miRNA:   3'- -UUGGagUGGGUGgUGCCUUUGGGggu -5'
9047 3' -58.4 NC_002512.2 + 71383 0.66 0.85599
Target:  5'- cGCUggCGCagGCCGCGGAAguccugcGCCCCCGc -3'
miRNA:   3'- uUGGa-GUGggUGGUGCCUU-------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 3369 0.66 0.85599
Target:  5'- aGACCgucCGCCCGcuCCGCGGggcccacAggUCCCCAg -3'
miRNA:   3'- -UUGGa--GUGGGU--GGUGCC-------UuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 114881 0.67 0.849163
Target:  5'- uGCCUgACCCACCugaaGGAGACgUUCGa -3'
miRNA:   3'- uUGGAgUGGGUGGug--CCUUUGgGGGU- -5'
9047 3' -58.4 NC_002512.2 + 75034 0.67 0.849163
Target:  5'- -uCUUC-CCCACgAUGGAcgcuGCCCCCu -3'
miRNA:   3'- uuGGAGuGGGUGgUGCCUu---UGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 12761 0.67 0.849163
Target:  5'- gGGCCcgcugCugCCGCCGCaGGAcucggcggcGCCCCCGc -3'
miRNA:   3'- -UUGGa----GugGGUGGUGcCUU---------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 127368 0.67 0.849163
Target:  5'- gGGCCUgACCC-CCgACGGccgcGACUCCCGc -3'
miRNA:   3'- -UUGGAgUGGGuGG-UGCCu---UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 45723 0.67 0.849163
Target:  5'- cGGCCaacCGCCCuacGCCAUGGcgcuACCCCCc -3'
miRNA:   3'- -UUGGa--GUGGG---UGGUGCCuu--UGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 121563 0.67 0.849163
Target:  5'- cGCCgacCGCCCGCCGCGc--GCCgCCAu -3'
miRNA:   3'- uUGGa--GUGGGUGGUGCcuuUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 101758 0.67 0.849163
Target:  5'- uGGCCcgggCGCuCCGuCgGCGGGAACCCUCGg -3'
miRNA:   3'- -UUGGa---GUG-GGU-GgUGCCUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 73428 0.67 0.849163
Target:  5'- cGCCcccgagUCcCCCGCCGCccccGGAGcCCCCCAg -3'
miRNA:   3'- uUGG------AGuGGGUGGUG----CCUUuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 13653 0.67 0.841403
Target:  5'- cGACCgu-CUCGCCGCGGcuccAGCUCCCGg -3'
miRNA:   3'- -UUGGaguGGGUGGUGCCu---UUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 14751 0.67 0.841403
Target:  5'- cGCCUCcCCCGUCGCGcGGACCCCg- -3'
miRNA:   3'- uUGGAGuGGGUGGUGCcUUUGGGGgu -5'
9047 3' -58.4 NC_002512.2 + 121288 0.67 0.841403
Target:  5'- gGGCCcgCGgCCGCCGCuccccGggGCCCCCc -3'
miRNA:   3'- -UUGGa-GUgGGUGGUGc----CuuUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 148594 0.67 0.841403
Target:  5'- aAACC-CACCCcgcagGCC-CGGAccGCCCCCc -3'
miRNA:   3'- -UUGGaGUGGG-----UGGuGCCUu-UGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 194768 0.67 0.841403
Target:  5'- gGACCUgGUCCGcguCCACGGGAACUCCgAg -3'
miRNA:   3'- -UUGGAgUGGGU---GGUGCCUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 90865 0.67 0.841403
Target:  5'- gAGCCgucCGCgCCGCCGuCGGA--CCCCCu -3'
miRNA:   3'- -UUGGa--GUG-GGUGGU-GCCUuuGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 86138 0.67 0.833466
Target:  5'- gGACCUggaaGCCgaCGCCGCGGccGCCUCCGa -3'
miRNA:   3'- -UUGGAg---UGG--GUGGUGCCuuUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.