miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 111709 0.66 0.90246
Target:  5'- uCGCGgaugacgaCGGaGUCUCCgGCGggcACGGUCG-CCa -3'
miRNA:   3'- -GCGC--------GCC-CAGAGG-CGC---UGCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 171677 0.66 0.90246
Target:  5'- gCGCGCGGGgugCgcgCCGCGcccacucaccaGCGucUCGacUCCg -3'
miRNA:   3'- -GCGCGCCCa--Ga--GGCGC-----------UGCu-AGC--AGG- -5'
9047 5' -59 NC_002512.2 + 199602 0.66 0.90246
Target:  5'- aCGCGgGGGcCUCCuccauggcgccgGCucCGcgCGUCCg -3'
miRNA:   3'- -GCGCgCCCaGAGG------------CGcuGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 105576 0.66 0.90246
Target:  5'- cCGcCGCGGccccgaucagCUCCGCG-CGGUCGagCCg -3'
miRNA:   3'- -GC-GCGCCca--------GAGGCGCuGCUAGCa-GG- -5'
9047 5' -59 NC_002512.2 + 2695 0.66 0.90246
Target:  5'- gCGCGCGGGagcgccugccgCUCCccCGGCuGcUCGUCCu -3'
miRNA:   3'- -GCGCGCCCa----------GAGGc-GCUG-CuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 96295 0.66 0.90246
Target:  5'- uGcCGCGGGcCgccgCCGCGGgcgggcCGGUCG-CCg -3'
miRNA:   3'- gC-GCGCCCaGa---GGCGCU------GCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 132473 0.66 0.90246
Target:  5'- gCGCGCGucucuccccGGcCUCCGCGuCGucgCGcCCg -3'
miRNA:   3'- -GCGCGC---------CCaGAGGCGCuGCua-GCaGG- -5'
9047 5' -59 NC_002512.2 + 169570 0.66 0.90187
Target:  5'- uCGC-CGGcGUCUCCGCguccgccagguacGACGAcagGUCCu -3'
miRNA:   3'- -GCGcGCC-CAGAGGCG-------------CUGCUag-CAGG- -5'
9047 5' -59 NC_002512.2 + 214902 0.66 0.900683
Target:  5'- aGCuGCGGGacUUUCUGCGcguccaccgcggccGCGGcuUCGUCCu -3'
miRNA:   3'- gCG-CGCCC--AGAGGCGC--------------UGCU--AGCAGG- -5'
9047 5' -59 NC_002512.2 + 32098 0.66 0.896468
Target:  5'- gGCcCGGGUgUCCucGCGGuCGAggucgggaucgUCGUCCa -3'
miRNA:   3'- gCGcGCCCAgAGG--CGCU-GCU-----------AGCAGG- -5'
9047 5' -59 NC_002512.2 + 211039 0.66 0.896468
Target:  5'- uGCGCGGccGUCccccgcuaccUCCGCu-CGcUCGUCCa -3'
miRNA:   3'- gCGCGCC--CAG----------AGGCGcuGCuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 90952 0.66 0.896468
Target:  5'- uGCGUGGG----CGCGACGAUCcaCCa -3'
miRNA:   3'- gCGCGCCCagagGCGCUGCUAGcaGG- -5'
9047 5' -59 NC_002512.2 + 123584 0.66 0.896468
Target:  5'- gCGCuGCGGGUCUgagaggacgCCGCGGCGGa----- -3'
miRNA:   3'- -GCG-CGCCCAGA---------GGCGCUGCUagcagg -5'
9047 5' -59 NC_002512.2 + 192894 0.66 0.896468
Target:  5'- aGCGCcgucgcgCUCCGCGGCGGUCcagagCCg -3'
miRNA:   3'- gCGCGccca---GAGGCGCUGCUAGca---GG- -5'
9047 5' -59 NC_002512.2 + 6675 0.66 0.896468
Target:  5'- gGC-CGGGacgcgCUCCGgGACGc-CGUCCc -3'
miRNA:   3'- gCGcGCCCa----GAGGCgCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 8207 0.66 0.896468
Target:  5'- cCGgGCGGGUgUCCGCgucccaGACGuaggccucgagcGUCGcgCCg -3'
miRNA:   3'- -GCgCGCCCAgAGGCG------CUGC------------UAGCa-GG- -5'
9047 5' -59 NC_002512.2 + 182805 0.66 0.896468
Target:  5'- aCGCGCaGGGUCUUCGUGGC---UGaCCu -3'
miRNA:   3'- -GCGCG-CCCAGAGGCGCUGcuaGCaGG- -5'
9047 5' -59 NC_002512.2 + 137724 0.66 0.896468
Target:  5'- uGC-CGGcGuUCUCCaGgGACGAgCGUCCg -3'
miRNA:   3'- gCGcGCC-C-AGAGG-CgCUGCUaGCAGG- -5'
9047 5' -59 NC_002512.2 + 105044 0.66 0.890276
Target:  5'- uCGuCGCGGGccucgCUCgGCGACGGcggcgUGUCg -3'
miRNA:   3'- -GC-GCGCCCa----GAGgCGCUGCUa----GCAGg -5'
9047 5' -59 NC_002512.2 + 82025 0.66 0.890276
Target:  5'- uCGCcCGGGUCggggucgcgCCgGCGGCGGUCG-Cg -3'
miRNA:   3'- -GCGcGCCCAGa--------GG-CGCUGCUAGCaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.