miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 30248 0.7 0.749725
Target:  5'- cCGCGggaaaCGGGUCcCCGCGgACGcgCGgagCCg -3'
miRNA:   3'- -GCGC-----GCCCAGaGGCGC-UGCuaGCa--GG- -5'
9047 5' -59 NC_002512.2 + 31833 0.71 0.684981
Target:  5'- aCGCGCGagacGUCcCUGUGACGAccgCGUCCc -3'
miRNA:   3'- -GCGCGCc---CAGaGGCGCUGCUa--GCAGG- -5'
9047 5' -59 NC_002512.2 + 32098 0.66 0.896468
Target:  5'- gGCcCGGGUgUCCucGCGGuCGAggucgggaucgUCGUCCa -3'
miRNA:   3'- gCGcGCCCAgAGG--CGCU-GCU-----------AGCAGG- -5'
9047 5' -59 NC_002512.2 + 32205 0.74 0.479361
Target:  5'- aGgGCGGGUgUCCGuUGAgGAgggCGUCCa -3'
miRNA:   3'- gCgCGCCCAgAGGC-GCUgCUa--GCAGG- -5'
9047 5' -59 NC_002512.2 + 32727 0.67 0.849109
Target:  5'- gGCGCGGGUggaagacggCCGUGGCGAccUUGUagcCCa -3'
miRNA:   3'- gCGCGCCCAga-------GGCGCUGCU--AGCA---GG- -5'
9047 5' -59 NC_002512.2 + 34843 0.66 0.919211
Target:  5'- cCGCccGCGGG---CCGCGGCGGcuucuUCGUCg -3'
miRNA:   3'- -GCG--CGCCCagaGGCGCUGCU-----AGCAGg -5'
9047 5' -59 NC_002512.2 + 35259 0.68 0.801813
Target:  5'- aCGgGCaGGUCccCCGCGGCGA-CGgCCg -3'
miRNA:   3'- -GCgCGcCCAGa-GGCGCUGCUaGCaGG- -5'
9047 5' -59 NC_002512.2 + 36393 0.67 0.849109
Target:  5'- gGCGCGaccgaGGUCguccaggCCGuCGugGGccUCGUCCc -3'
miRNA:   3'- gCGCGC-----CCAGa------GGC-GCugCU--AGCAGG- -5'
9047 5' -59 NC_002512.2 + 38103 0.67 0.877303
Target:  5'- -aCGUGGGaaUCUCUGCcugucacgGGCGAUcCGUCCc -3'
miRNA:   3'- gcGCGCCC--AGAGGCG--------CUGCUA-GCAGG- -5'
9047 5' -59 NC_002512.2 + 38888 0.71 0.684037
Target:  5'- cCGCGCGGGcaguacgcggucuUCUCgGCGACGGccCGgaggggCCg -3'
miRNA:   3'- -GCGCGCCC-------------AGAGgCGCUGCUa-GCa-----GG- -5'
9047 5' -59 NC_002512.2 + 38974 0.7 0.749724
Target:  5'- cCGCGCGGGUCUgUGUaaaaGCGuGUCGUUUg -3'
miRNA:   3'- -GCGCGCCCAGAgGCGc---UGC-UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 40278 0.7 0.731564
Target:  5'- gCGUGCGGccgC-CCGCGcACGAacgUCGUCCc -3'
miRNA:   3'- -GCGCGCCca-GaGGCGC-UGCU---AGCAGG- -5'
9047 5' -59 NC_002512.2 + 41524 0.68 0.82615
Target:  5'- uGCGgcaacuCGGGUCU-CGCGACGcggaaGUCCg -3'
miRNA:   3'- gCGC------GCCCAGAgGCGCUGCuag--CAGG- -5'
9047 5' -59 NC_002512.2 + 42938 0.7 0.731564
Target:  5'- aGCGgGGGaUCUCCGCcagguaGCGGUUGaCCa -3'
miRNA:   3'- gCGCgCCC-AGAGGCGc-----UGCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 43040 0.66 0.919211
Target:  5'- gGCGCaGGUcCUCgGCGACGcgCagggCCu -3'
miRNA:   3'- gCGCGcCCA-GAGgCGCUGCuaGca--GG- -5'
9047 5' -59 NC_002512.2 + 44676 0.71 0.656516
Target:  5'- aCGaCGCGGGcCaCCGCGGCG-UCGaCCg -3'
miRNA:   3'- -GC-GCGCCCaGaGGCGCUGCuAGCaGG- -5'
9047 5' -59 NC_002512.2 + 45082 0.67 0.863569
Target:  5'- gGCGCggaaGGGUCUccCCGCGGaggccCGGgccaCGUCCu -3'
miRNA:   3'- gCGCG----CCCAGA--GGCGCU-----GCUa---GCAGG- -5'
9047 5' -59 NC_002512.2 + 45410 0.7 0.716817
Target:  5'- uCGUGCGGGcgCUcgacggcggcgccggCCGCGGCGAcucccUGUCCg -3'
miRNA:   3'- -GCGCGCCCa-GA---------------GGCGCUGCUa----GCAGG- -5'
9047 5' -59 NC_002512.2 + 46664 0.67 0.866375
Target:  5'- aGCGUGuuucuggguaaauacGGUCUcgggugCCGUGACGAUCucgGUCCc -3'
miRNA:   3'- gCGCGC---------------CCAGA------GGCGCUGCUAG---CAGG- -5'
9047 5' -59 NC_002512.2 + 49606 0.69 0.767526
Target:  5'- gGCGaCGGGaacgCcgCCGCcauGAgGAUCGUCCg -3'
miRNA:   3'- gCGC-GCCCa---Ga-GGCG---CUgCUAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.