miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 1982 0.66 0.913833
Target:  5'- gGCGCGuccGUCUCCGCcuCGGacUCGcCCg -3'
miRNA:   3'- gCGCGCc--CAGAGGCGcuGCU--AGCaGG- -5'
9047 5' -59 NC_002512.2 + 2695 0.66 0.90246
Target:  5'- gCGCGCGGGagcgccugccgCUCCccCGGCuGcUCGUCCu -3'
miRNA:   3'- -GCGCGCCCa----------GAGGc-GCUG-CuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 3439 0.66 0.913833
Target:  5'- uCGCGgGgcuGGUCggugaCgGCGACGAagGUCCc -3'
miRNA:   3'- -GCGCgC---CCAGa----GgCGCUGCUagCAGG- -5'
9047 5' -59 NC_002512.2 + 3490 0.69 0.776273
Target:  5'- aCGCGaCGGGUC-CCgGCGcCG-UCGUCg -3'
miRNA:   3'- -GCGC-GCCCAGaGG-CGCuGCuAGCAGg -5'
9047 5' -59 NC_002512.2 + 5763 0.7 0.726055
Target:  5'- gGCGCGGGUCcacggCCGaGAUGGUCaccacgaccgacacgGUCCc -3'
miRNA:   3'- gCGCGCCCAGa----GGCgCUGCUAG---------------CAGG- -5'
9047 5' -59 NC_002512.2 + 6361 0.68 0.810068
Target:  5'- gGcCGCGGGcgcgugccguUCUCCGCcgUGGUCGUCg -3'
miRNA:   3'- gC-GCGCCC----------AGAGGCGcuGCUAGCAGg -5'
9047 5' -59 NC_002512.2 + 6615 0.68 0.84162
Target:  5'- gCGCGCGGcGUC-CCGCcccccGACGAcgCGgacgCCc -3'
miRNA:   3'- -GCGCGCC-CAGaGGCG-----CUGCUa-GCa---GG- -5'
9047 5' -59 NC_002512.2 + 6675 0.66 0.896468
Target:  5'- gGC-CGGGacgcgCUCCGgGACGc-CGUCCc -3'
miRNA:   3'- gCGcGCCCa----GAGGCgCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 7365 0.67 0.877303
Target:  5'- cCGCGaCGGcGg--CCGCGGCGggCGgCCa -3'
miRNA:   3'- -GCGC-GCC-CagaGGCGCUGCuaGCaGG- -5'
9047 5' -59 NC_002512.2 + 8061 0.67 0.863569
Target:  5'- -cCGCGGGUCggacgCCGaGACGAgcuccucgaacUCGUCg -3'
miRNA:   3'- gcGCGCCCAGa----GGCgCUGCU-----------AGCAGg -5'
9047 5' -59 NC_002512.2 + 8207 0.66 0.896468
Target:  5'- cCGgGCGGGUgUCCGCgucccaGACGuaggccucgagcGUCGcgCCg -3'
miRNA:   3'- -GCgCGCCCAgAGGCG------CUGC------------UAGCa-GG- -5'
9047 5' -59 NC_002512.2 + 11257 0.67 0.870529
Target:  5'- gCGCGacaGGG--UCC-CGACGcgCGUCCu -3'
miRNA:   3'- -GCGCg--CCCagAGGcGCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 15695 0.74 0.515231
Target:  5'- gCGCaGCGGGUCcuccUCCGCGACGAUgaCGggCUc -3'
miRNA:   3'- -GCG-CGCCCAG----AGGCGCUGCUA--GCa-GG- -5'
9047 5' -59 NC_002512.2 + 16038 0.66 0.908249
Target:  5'- gGCaGCGGGaUCUucuccccgcgCCGCGccuCGAgacucUCGUCCa -3'
miRNA:   3'- gCG-CGCCC-AGA----------GGCGCu--GCU-----AGCAGG- -5'
9047 5' -59 NC_002512.2 + 16536 0.66 0.908249
Target:  5'- aGCGCGGGcgucccccuggCUCCG-GAUGuacUCGUCg -3'
miRNA:   3'- gCGCGCCCa----------GAGGCgCUGCu--AGCAGg -5'
9047 5' -59 NC_002512.2 + 21077 0.66 0.913833
Target:  5'- aCGgGCGGcGgucccgCUCCGgGGCGAcCG-CCg -3'
miRNA:   3'- -GCgCGCC-Ca-----GAGGCgCUGCUaGCaGG- -5'
9047 5' -59 NC_002512.2 + 22737 0.66 0.890276
Target:  5'- -cCGCGGG-CggCUGCuGACGAUCGUgugCCa -3'
miRNA:   3'- gcGCGCCCaGa-GGCG-CUGCUAGCA---GG- -5'
9047 5' -59 NC_002512.2 + 24236 0.69 0.758674
Target:  5'- gGCGuCGGG-C-CCGcCGACGG-CGUCCc -3'
miRNA:   3'- gCGC-GCCCaGaGGC-GCUGCUaGCAGG- -5'
9047 5' -59 NC_002512.2 + 24373 0.71 0.664129
Target:  5'- uGCGCucgaagucgucGUcCUCCGCGACGccGUCGUCCg -3'
miRNA:   3'- gCGCGcc---------CA-GAGGCGCUGC--UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 24926 0.7 0.713103
Target:  5'- gGCGuCGGG-CUCggcccgcaGCGACGAggaaCGUCCa -3'
miRNA:   3'- gCGC-GCCCaGAGg-------CGCUGCUa---GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.