miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 146508 1.12 0.00195
Target:  5'- aCGCGCGGGUCUCCGCGACGAUCGUCCa -3'
miRNA:   3'- -GCGCGCCCAGAGGCGCUGCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 95541 0.79 0.270673
Target:  5'- gGUGCGGGUCUggagcucggCCGCGGCGA--GUCCg -3'
miRNA:   3'- gCGCGCCCAGA---------GGCGCUGCUagCAGG- -5'
9047 5' -59 NC_002512.2 + 169062 0.78 0.308439
Target:  5'- gGCGCGaGGggCUCCGCGGCGGcggCGUCg -3'
miRNA:   3'- gCGCGC-CCa-GAGGCGCUGCUa--GCAGg -5'
9047 5' -59 NC_002512.2 + 137247 0.77 0.335779
Target:  5'- cCGCGCGGGUC-CCGgcgcCGGCGGccgcCGUCCg -3'
miRNA:   3'- -GCGCGCCCAGaGGC----GCUGCUa---GCAGG- -5'
9047 5' -59 NC_002512.2 + 142184 0.76 0.395605
Target:  5'- -uCGCGGcGUCUCCGCGucgcCGcgCGUCCc -3'
miRNA:   3'- gcGCGCC-CAGAGGCGCu---GCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 134282 0.76 0.419746
Target:  5'- cCGCGCgGGGUC-CCG-GAgGAUCGUCUu -3'
miRNA:   3'- -GCGCG-CCCAGaGGCgCUgCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 157174 0.76 0.419746
Target:  5'- gGCGUGGGcggCggCGCGACGAUCGaCCg -3'
miRNA:   3'- gCGCGCCCa--GagGCGCUGCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 141883 0.75 0.470584
Target:  5'- uCGCGCGGGUCuauauaaaucUCCGCGuCGGggCG-CCg -3'
miRNA:   3'- -GCGCGCCCAG----------AGGCGCuGCUa-GCaGG- -5'
9047 5' -59 NC_002512.2 + 78290 0.74 0.477599
Target:  5'- aCGCGCGGaccgugucgucucGUUUCCGCGacugcgaGCGAcCGUCCg -3'
miRNA:   3'- -GCGCGCC-------------CAGAGGCGC-------UGCUaGCAGG- -5'
9047 5' -59 NC_002512.2 + 32205 0.74 0.479361
Target:  5'- aGgGCGGGUgUCCGuUGAgGAgggCGUCCa -3'
miRNA:   3'- gCgCGCCCAgAGGC-GCUgCUa--GCAGG- -5'
9047 5' -59 NC_002512.2 + 114769 0.74 0.488217
Target:  5'- uGCGCGGGU---CGCGACGGggcacggCGUCCc -3'
miRNA:   3'- gCGCGCCCAgagGCGCUGCUa------GCAGG- -5'
9047 5' -59 NC_002512.2 + 174771 0.74 0.488217
Target:  5'- cCGCGUccGUCUCCGCGAac-UCGUCCa -3'
miRNA:   3'- -GCGCGccCAGAGGCGCUgcuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 80248 0.74 0.506156
Target:  5'- aCGUGCGGGccgggCUCCGUG-CGGUCcUCCc -3'
miRNA:   3'- -GCGCGCCCa----GAGGCGCuGCUAGcAGG- -5'
9047 5' -59 NC_002512.2 + 64627 0.74 0.506156
Target:  5'- gGUcCGGGgCUCCGCGACG--CGUCCg -3'
miRNA:   3'- gCGcGCCCaGAGGCGCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 152513 0.74 0.506156
Target:  5'- aGCGUuccggggucgGGGUCUCgGCGACGG-CGuUCCg -3'
miRNA:   3'- gCGCG----------CCCAGAGgCGCUGCUaGC-AGG- -5'
9047 5' -59 NC_002512.2 + 15695 0.74 0.515231
Target:  5'- gCGCaGCGGGUCcuccUCCGCGACGAUgaCGggCUc -3'
miRNA:   3'- -GCG-CGCCCAG----AGGCGCUGCUA--GCa-GG- -5'
9047 5' -59 NC_002512.2 + 80923 0.74 0.524371
Target:  5'- uCGCGCGGGcgccCUCC-CGGCGGUaggugcCGUCCc -3'
miRNA:   3'- -GCGCGCCCa---GAGGcGCUGCUA------GCAGG- -5'
9047 5' -59 NC_002512.2 + 174334 0.73 0.533571
Target:  5'- gGCGgGGGUCcgCCGCG-CccUCGUCCg -3'
miRNA:   3'- gCGCgCCCAGa-GGCGCuGcuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 85187 0.73 0.54283
Target:  5'- gCGCGaCGGGUC-CC-CGugGGUCG-CCg -3'
miRNA:   3'- -GCGC-GCCCAGaGGcGCugCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 103471 0.73 0.552139
Target:  5'- aCGCGgcuCGGGUCUCgGCGGCGGccgcggaccgcUCG-CCg -3'
miRNA:   3'- -GCGC---GCCCAGAGgCGCUGCU-----------AGCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.