miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 2695 0.66 0.90246
Target:  5'- gCGCGCGGGagcgccugccgCUCCccCGGCuGcUCGUCCu -3'
miRNA:   3'- -GCGCGCCCa----------GAGGc-GCUG-CuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 98904 0.66 0.912179
Target:  5'- uCGCcCGaucuccuccuccgaGGUCUcCCGauauaaGGCGGUCGUCCg -3'
miRNA:   3'- -GCGcGC--------------CCAGA-GGCg-----CUGCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 133180 0.66 0.911624
Target:  5'- cCGCGgGGGUCaaauagucgaaacCCGUuaucuucggGACG-UCGUCCg -3'
miRNA:   3'- -GCGCgCCCAGa------------GGCG---------CUGCuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 8207 0.66 0.896468
Target:  5'- cCGgGCGGGUgUCCGCgucccaGACGuaggccucgagcGUCGcgCCg -3'
miRNA:   3'- -GCgCGCCCAgAGGCG------CUGC------------UAGCa-GG- -5'
9047 5' -59 NC_002512.2 + 108810 0.66 0.889646
Target:  5'- cCGCGUGGGUCcgcuuccUCCGCGccuCGggCGg-- -3'
miRNA:   3'- -GCGCGCCCAG-------AGGCGCu--GCuaGCagg -5'
9047 5' -59 NC_002512.2 + 22737 0.66 0.890276
Target:  5'- -cCGCGGG-CggCUGCuGACGAUCGUgugCCa -3'
miRNA:   3'- gcGCGCCCaGa-GGCG-CUGCUAGCA---GG- -5'
9047 5' -59 NC_002512.2 + 132025 0.66 0.890276
Target:  5'- gCGgGCGGG--UCCGUcuCGGUCGUCg -3'
miRNA:   3'- -GCgCGCCCagAGGCGcuGCUAGCAGg -5'
9047 5' -59 NC_002512.2 + 108435 0.66 0.903048
Target:  5'- gGCGCGGGgcggaccccucagggCUCCGgGgccgacuccGCGggCGUCUc -3'
miRNA:   3'- gCGCGCCCa--------------GAGGCgC---------UGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 6675 0.66 0.896468
Target:  5'- gGC-CGGGacgcgCUCCGgGACGc-CGUCCc -3'
miRNA:   3'- gCGcGCCCa----GAGGCgCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 182805 0.66 0.896468
Target:  5'- aCGCGCaGGGUCUUCGUGGC---UGaCCu -3'
miRNA:   3'- -GCGCG-CCCAGAGGCGCUGcuaGCaGG- -5'
9047 5' -59 NC_002512.2 + 1982 0.66 0.913833
Target:  5'- gGCGCGuccGUCUCCGCcuCGGacUCGcCCg -3'
miRNA:   3'- gCGCGCc--CAGAGGCGcuGCU--AGCaGG- -5'
9047 5' -59 NC_002512.2 + 16536 0.66 0.908249
Target:  5'- aGCGCGGGcgucccccuggCUCCG-GAUGuacUCGUCg -3'
miRNA:   3'- gCGCGCCCa----------GAGGCgCUGCu--AGCAGg -5'
9047 5' -59 NC_002512.2 + 16038 0.66 0.908249
Target:  5'- gGCaGCGGGaUCUucuccccgcgCCGCGccuCGAgacucUCGUCCa -3'
miRNA:   3'- gCG-CGCCC-AGA----------GGCGCu--GCU-----AGCAGG- -5'
9047 5' -59 NC_002512.2 + 96295 0.66 0.90246
Target:  5'- uGcCGCGGGcCgccgCCGCGGgcgggcCGGUCG-CCg -3'
miRNA:   3'- gC-GCGCCCaGa---GGCGCU------GCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 82025 0.66 0.890276
Target:  5'- uCGCcCGGGUCggggucgcgCCgGCGGCGGUCG-Cg -3'
miRNA:   3'- -GCGcGCCCAGa--------GG-CGCUGCUAGCaGg -5'
9047 5' -59 NC_002512.2 + 105576 0.66 0.90246
Target:  5'- cCGcCGCGGccccgaucagCUCCGCG-CGGUCGagCCg -3'
miRNA:   3'- -GC-GCGCCca--------GAGGCGCuGCUAGCa-GG- -5'
9047 5' -59 NC_002512.2 + 115443 0.66 0.889646
Target:  5'- gCGCGCGGGgaaccgcucgUUCCGCGGaccgcgugggagcCGGUCGa-- -3'
miRNA:   3'- -GCGCGCCCa---------GAGGCGCU-------------GCUAGCagg -5'
9047 5' -59 NC_002512.2 + 32098 0.66 0.896468
Target:  5'- gGCcCGGGUgUCCucGCGGuCGAggucgggaucgUCGUCCa -3'
miRNA:   3'- gCGcGCCCAgAGG--CGCU-GCU-----------AGCAGG- -5'
9047 5' -59 NC_002512.2 + 105044 0.66 0.890276
Target:  5'- uCGuCGCGGGccucgCUCgGCGACGGcggcgUGUCg -3'
miRNA:   3'- -GC-GCGCCCa----GAGgCGCUGCUa----GCAGg -5'
9047 5' -59 NC_002512.2 + 106702 0.66 0.890276
Target:  5'- gGCGaUGGGgcUCUCCGgGAUGAccgCGcUCCu -3'
miRNA:   3'- gCGC-GCCC--AGAGGCgCUGCUa--GC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.