miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 31833 0.71 0.684981
Target:  5'- aCGCGCGagacGUCcCUGUGACGAccgCGUCCc -3'
miRNA:   3'- -GCGCGCc---CAGaGGCGCUGCUa--GCAGG- -5'
9047 5' -59 NC_002512.2 + 138914 0.72 0.599304
Target:  5'- aCGCuCGGGUC-CCGCaggaucugGugGAUCGUCg -3'
miRNA:   3'- -GCGcGCCCAGaGGCG--------CugCUAGCAGg -5'
9047 5' -59 NC_002512.2 + 80720 0.72 0.622172
Target:  5'- gCGCGCGGGcccgCgggcggcaccggccCCGCGGCGGUCccggGUCCc -3'
miRNA:   3'- -GCGCGCCCa---Ga-------------GGCGCUGCUAG----CAGG- -5'
9047 5' -59 NC_002512.2 + 79894 0.71 0.646985
Target:  5'- gGCGUGGGUUcCCGCGuCGucagGUCCa -3'
miRNA:   3'- gCGCGCCCAGaGGCGCuGCuag-CAGG- -5'
9047 5' -59 NC_002512.2 + 163031 0.71 0.646985
Target:  5'- uGCGC-GGUCaaCGCGAcaCGAUCGUCUc -3'
miRNA:   3'- gCGCGcCCAGagGCGCU--GCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 44676 0.71 0.656516
Target:  5'- aCGaCGCGGGcCaCCGCGGCG-UCGaCCg -3'
miRNA:   3'- -GC-GCGCCCaGaGGCGCUGCuAGCaGG- -5'
9047 5' -59 NC_002512.2 + 152418 0.71 0.656516
Target:  5'- uGCGCGGGaUCcCCgGCGACGcgCGUg- -3'
miRNA:   3'- gCGCGCCC-AGaGG-CGCUGCuaGCAgg -5'
9047 5' -59 NC_002512.2 + 24373 0.71 0.664129
Target:  5'- uGCGCucgaagucgucGUcCUCCGCGACGccGUCGUCCg -3'
miRNA:   3'- gCGCGcc---------CA-GAGGCGCUGC--UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 38888 0.71 0.684037
Target:  5'- cCGCGCGGGcaguacgcggucuUCUCgGCGACGGccCGgaggggCCg -3'
miRNA:   3'- -GCGCGCCC-------------AGAGgCGCUGCUa-GCa-----GG- -5'
9047 5' -59 NC_002512.2 + 98585 0.73 0.570898
Target:  5'- gGCgGCGGGUCgUCCGCGcUGcaCGUCCa -3'
miRNA:   3'- gCG-CGCCCAG-AGGCGCuGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 85187 0.73 0.54283
Target:  5'- gCGCGaCGGGUC-CC-CGugGGUCG-CCg -3'
miRNA:   3'- -GCGC-GCCCAGaGGcGCugCUAGCaGG- -5'
9047 5' -59 NC_002512.2 + 80923 0.74 0.524371
Target:  5'- uCGCGCGGGcgccCUCC-CGGCGGUaggugcCGUCCc -3'
miRNA:   3'- -GCGCGCCCa---GAGGcGCUGCUA------GCAGG- -5'
9047 5' -59 NC_002512.2 + 142184 0.76 0.395605
Target:  5'- -uCGCGGcGUCUCCGCGucgcCGcgCGUCCc -3'
miRNA:   3'- gcGCGCC-CAGAGGCGCu---GCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 134282 0.76 0.419746
Target:  5'- cCGCGCgGGGUC-CCG-GAgGAUCGUCUu -3'
miRNA:   3'- -GCGCG-CCCAGaGGCgCUgCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 141883 0.75 0.470584
Target:  5'- uCGCGCGGGUCuauauaaaucUCCGCGuCGGggCG-CCg -3'
miRNA:   3'- -GCGCGCCCAG----------AGGCGCuGCUa-GCaGG- -5'
9047 5' -59 NC_002512.2 + 32205 0.74 0.479361
Target:  5'- aGgGCGGGUgUCCGuUGAgGAgggCGUCCa -3'
miRNA:   3'- gCgCGCCCAgAGGC-GCUgCUa--GCAGG- -5'
9047 5' -59 NC_002512.2 + 80248 0.74 0.506156
Target:  5'- aCGUGCGGGccgggCUCCGUG-CGGUCcUCCc -3'
miRNA:   3'- -GCGCGCCCa----GAGGCGCuGCUAGcAGG- -5'
9047 5' -59 NC_002512.2 + 152513 0.74 0.506156
Target:  5'- aGCGUuccggggucgGGGUCUCgGCGACGG-CGuUCCg -3'
miRNA:   3'- gCGCG----------CCCAGAGgCGCUGCUaGC-AGG- -5'
9047 5' -59 NC_002512.2 + 64627 0.74 0.506156
Target:  5'- gGUcCGGGgCUCCGCGACG--CGUCCg -3'
miRNA:   3'- gCGcGCCCaGAGGCGCUGCuaGCAGG- -5'
9047 5' -59 NC_002512.2 + 15695 0.74 0.515231
Target:  5'- gCGCaGCGGGUCcuccUCCGCGACGAUgaCGggCUc -3'
miRNA:   3'- -GCG-CGCCCAG----AGGCGCUGCUA--GCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.