miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 3' -54.9 NC_002512.2 + 81251 0.68 0.937412
Target:  5'- gUCCgGCGGcCUGCgGUUGAGGUCGAcguacggcagggggGCGg -3'
miRNA:   3'- aAGG-CGUU-GAUG-CAGCUCCAGCU--------------CGC- -5'
9051 3' -54.9 NC_002512.2 + 85685 0.74 0.668796
Target:  5'- gUUCCGCGGaugACGUCGAGGUgacgGAGCu -3'
miRNA:   3'- -AAGGCGUUga-UGCAGCUCCAg---CUCGc -5'
9051 3' -54.9 NC_002512.2 + 86598 0.67 0.943371
Target:  5'- -gCCGCGAUg--GUCGGGGg-GAGCGg -3'
miRNA:   3'- aaGGCGUUGaugCAGCUCCagCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 87800 0.69 0.880786
Target:  5'- cUCCuGUGugU-CGUCGAGG-CGGGCGg -3'
miRNA:   3'- aAGG-CGUugAuGCAGCUCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 88434 0.67 0.943371
Target:  5'- cUCCGCGAUaacggACGUCGGac-CGAGCGg -3'
miRNA:   3'- aAGGCGUUGa----UGCAGCUccaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 95267 0.67 0.962778
Target:  5'- --gCGCGGCUccugaACGgCGGGGUCGGGUu -3'
miRNA:   3'- aagGCGUUGA-----UGCaGCUCCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 99265 0.68 0.923799
Target:  5'- -cCCGagGACgccggACG-CGGGGUCGAGCa -3'
miRNA:   3'- aaGGCg-UUGa----UGCaGCUCCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 99383 0.69 0.887596
Target:  5'- cUCCGCca--GCGUCGGGGUCcggacucccgGGGCGg -3'
miRNA:   3'- aAGGCGuugaUGCAGCUCCAG----------CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 99494 0.67 0.962778
Target:  5'- aUCCGCAAg-GCGUgccagaCGGGGUUG-GCGg -3'
miRNA:   3'- aAGGCGUUgaUGCA------GCUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 101551 0.73 0.733674
Target:  5'- -gCgGCGGCggggacggagucgAgGUCGAGGUCGAGCGu -3'
miRNA:   3'- aaGgCGUUGa------------UgCAGCUCCAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 101840 0.68 0.923799
Target:  5'- -gCCGCGAC--CGUCGGGGcCGuGCa -3'
miRNA:   3'- aaGGCGUUGauGCAGCUCCaGCuCGc -5'
9051 3' -54.9 NC_002512.2 + 103901 0.68 0.929036
Target:  5'- -gUCGguACgcgACGUUGAGGUCGGGa- -3'
miRNA:   3'- aaGGCguUGa--UGCAGCUCCAGCUCgc -5'
9051 3' -54.9 NC_002512.2 + 104926 0.66 0.97699
Target:  5'- gUCCGCGACggccuccuCGUCcGGcGUCGGcGCGg -3'
miRNA:   3'- aAGGCGUUGau------GCAGcUC-CAGCU-CGC- -5'
9051 3' -54.9 NC_002512.2 + 106779 0.7 0.859099
Target:  5'- -cCCGCGgcACUG-GUCGGGGUCGGGg- -3'
miRNA:   3'- aaGGCGU--UGAUgCAGCUCCAGCUCgc -5'
9051 3' -54.9 NC_002512.2 + 108817 0.69 0.900563
Target:  5'- gUUCCGCGAg-GCGUgCGAGGUguacgGAGCGu -3'
miRNA:   3'- -AAGGCGUUgaUGCA-GCUCCAg----CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 110778 0.76 0.526717
Target:  5'- cUCCGCAGCUGCGcCGAGGccgcccgcaccuccUCGcGCGa -3'
miRNA:   3'- aAGGCGUUGAUGCaGCUCC--------------AGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 116322 0.67 0.959331
Target:  5'- -cCCGCGACUuCuUCGAGGUCGucuucGCc -3'
miRNA:   3'- aaGGCGUUGAuGcAGCUCCAGCu----CGc -5'
9051 3' -54.9 NC_002512.2 + 117326 0.69 0.880786
Target:  5'- -aCCGCcuCUACGUCGGcGUCGAGa- -3'
miRNA:   3'- aaGGCGuuGAUGCAGCUcCAGCUCgc -5'
9051 3' -54.9 NC_002512.2 + 119765 0.66 0.97699
Target:  5'- ---aGCGAC-GCGUCGcGGUCGAcgGCGg -3'
miRNA:   3'- aaggCGUUGaUGCAGCuCCAGCU--CGC- -5'
9051 3' -54.9 NC_002512.2 + 121537 0.68 0.918333
Target:  5'- cUCCG--GC-GCGcCGGGGUCGAGCa -3'
miRNA:   3'- aAGGCguUGaUGCaGCUCCAGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.