miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 3' -54.9 NC_002512.2 + 2111 0.74 0.668796
Target:  5'- -gCCGCGGCU-CGgucgCGGGcGUCGAGCGu -3'
miRNA:   3'- aaGGCGUUGAuGCa---GCUC-CAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 5074 0.68 0.918333
Target:  5'- -cCCGCGGCgUugGUCGucGUCGccGGCGu -3'
miRNA:   3'- aaGGCGUUG-AugCAGCucCAGC--UCGC- -5'
9051 3' -54.9 NC_002512.2 + 5896 0.67 0.943371
Target:  5'- cUCUGCucaauGCUGCGgucucggcuucCGAGGUCGAauGCGa -3'
miRNA:   3'- aAGGCGu----UGAUGCa----------GCUCCAGCU--CGC- -5'
9051 3' -54.9 NC_002512.2 + 6794 0.66 0.974276
Target:  5'- aUCUGUAACUGcCGUCucGGUcaaccgccuucucCGAGCGg -3'
miRNA:   3'- aAGGCGUUGAU-GCAGcuCCA-------------GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 7312 0.66 0.974532
Target:  5'- cUCCGCGACgGCGggccgCGGcgggacGGUCGGGUc -3'
miRNA:   3'- aAGGCGUUGaUGCa----GCU------CCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 12114 0.67 0.959331
Target:  5'- -gCCGCGACcccgGCGaCGGGGaCGGGCc -3'
miRNA:   3'- aaGGCGUUGa---UGCaGCUCCaGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 24685 0.66 0.969051
Target:  5'- -gCCGCucggGCgggggucuCGUCGAGGacgCGGGCGa -3'
miRNA:   3'- aaGGCGu---UGau------GCAGCUCCa--GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 39369 0.67 0.955671
Target:  5'- -cCCGacCAGCU-CGUCGAGGgagugccggcacUCGAGCa -3'
miRNA:   3'- aaGGC--GUUGAuGCAGCUCC------------AGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 40657 0.69 0.906713
Target:  5'- gUCCGCGACggcgACGgacggaucCGAcGUCGAGCa -3'
miRNA:   3'- aAGGCGUUGa---UGCa-------GCUcCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 44900 0.69 0.880786
Target:  5'- -gCCGCAGCgcucACGUCGAcGGcCGcGCGg -3'
miRNA:   3'- aaGGCGUUGa---UGCAGCU-CCaGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 45369 0.69 0.887596
Target:  5'- -cCCGCGacuGCUGCGaCGAGGacgCGGGCc -3'
miRNA:   3'- aaGGCGU---UGAUGCaGCUCCa--GCUCGc -5'
9051 3' -54.9 NC_002512.2 + 56380 0.67 0.943371
Target:  5'- aUCgGCGGacgGCGgggCGAGGUCGAGaCa -3'
miRNA:   3'- aAGgCGUUga-UGCa--GCUCCAGCUC-Gc -5'
9051 3' -54.9 NC_002512.2 + 62717 0.67 0.962443
Target:  5'- --gCGCAGC-GCGUCGcGGUCGAcggccucGCGg -3'
miRNA:   3'- aagGCGUUGaUGCAGCuCCAGCU-------CGC- -5'
9051 3' -54.9 NC_002512.2 + 64636 0.69 0.89419
Target:  5'- cUCCGCGAC-GCGUccgCGAGGUCGuGg- -3'
miRNA:   3'- aAGGCGUUGaUGCA---GCUCCAGCuCgc -5'
9051 3' -54.9 NC_002512.2 + 64897 0.71 0.819099
Target:  5'- cUCCGuCGGCcgcgAUGUCGAGGcCGGGCc -3'
miRNA:   3'- aAGGC-GUUGa---UGCAGCUCCaGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 71236 0.72 0.765812
Target:  5'- -aCCGUGGCcucgACGUCGGGGUCGaAGgGg -3'
miRNA:   3'- aaGGCGUUGa---UGCAGCUCCAGC-UCgC- -5'
9051 3' -54.9 NC_002512.2 + 73110 0.66 0.97699
Target:  5'- ---gGCGACgaaaACGUCaGGGGUCGuGCGc -3'
miRNA:   3'- aaggCGUUGa---UGCAG-CUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 74554 0.71 0.81058
Target:  5'- -gCCGCGGCgACGggagCGAGGUUG-GCGa -3'
miRNA:   3'- aaGGCGUUGaUGCa---GCUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 79216 0.66 0.97699
Target:  5'- -aCCGCcGCgcccGCGgaccUCGAGGcUCGAGCu -3'
miRNA:   3'- aaGGCGuUGa---UGC----AGCUCC-AGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 80675 0.74 0.638749
Target:  5'- -cCCGCGGCggcgGCGaCGGGGgCGAGCGg -3'
miRNA:   3'- aaGGCGUUGa---UGCaGCUCCaGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.