miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 3' -54.9 NC_002512.2 + 80675 0.74 0.638749
Target:  5'- -cCCGCGGCggcgGCGaCGGGGgCGAGCGg -3'
miRNA:   3'- aaGGCGUUGa---UGCaGCUCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 5074 0.68 0.918333
Target:  5'- -cCCGCGGCgUugGUCGucGUCGccGGCGu -3'
miRNA:   3'- aaGGCGUUG-AugCAGCucCAGC--UCGC- -5'
9051 3' -54.9 NC_002512.2 + 40657 0.69 0.906713
Target:  5'- gUCCGCGACggcgACGgacggaucCGAcGUCGAGCa -3'
miRNA:   3'- aAGGCGUUGa---UGCa-------GCUcCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 64636 0.69 0.89419
Target:  5'- cUCCGCGAC-GCGUccgCGAGGUCGuGg- -3'
miRNA:   3'- aAGGCGUUGaUGCA---GCUCCAGCuCgc -5'
9051 3' -54.9 NC_002512.2 + 99383 0.69 0.887596
Target:  5'- cUCCGCca--GCGUCGGGGUCcggacucccgGGGCGg -3'
miRNA:   3'- aAGGCGuugaUGCAGCUCCAG----------CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 45369 0.69 0.887596
Target:  5'- -cCCGCGacuGCUGCGaCGAGGacgCGGGCc -3'
miRNA:   3'- aaGGCGU---UGAUGCaGCUCCa--GCUCGc -5'
9051 3' -54.9 NC_002512.2 + 87800 0.69 0.880786
Target:  5'- cUCCuGUGugU-CGUCGAGG-CGGGCGg -3'
miRNA:   3'- aAGG-CGUugAuGCAGCUCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 123547 0.69 0.880786
Target:  5'- gUCgGCGggcGCggACGUCGAGGgggaGAGCGa -3'
miRNA:   3'- aAGgCGU---UGa-UGCAGCUCCag--CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 117326 0.69 0.880786
Target:  5'- -aCCGCcuCUACGUCGGcGUCGAGa- -3'
miRNA:   3'- aaGGCGuuGAUGCAGCUcCAGCUCgc -5'
9051 3' -54.9 NC_002512.2 + 44900 0.69 0.880786
Target:  5'- -gCCGCAGCgcucACGUCGAcGGcCGcGCGg -3'
miRNA:   3'- aaGGCGUUGa---UGCAGCU-CCaGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 106779 0.7 0.859099
Target:  5'- -cCCGCGgcACUG-GUCGGGGUCGGGg- -3'
miRNA:   3'- aaGGCGU--UGAUgCAGCUCCAGCUCgc -5'
9051 3' -54.9 NC_002512.2 + 154352 0.7 0.842853
Target:  5'- cUCCGCcACgGCGUCGAGGgugcccgucaacgUCGAGgGu -3'
miRNA:   3'- aAGGCGuUGaUGCAGCUCC-------------AGCUCgC- -5'
9051 3' -54.9 NC_002512.2 + 64897 0.71 0.819099
Target:  5'- cUCCGuCGGCcgcgAUGUCGAGGcCGGGCc -3'
miRNA:   3'- aAGGC-GUUGa---UGCAGCUCCaGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 74554 0.71 0.81058
Target:  5'- -gCCGCGGCgACGggagCGAGGUUG-GCGa -3'
miRNA:   3'- aaGGCGUUGaUGCa---GCUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 127439 0.72 0.775028
Target:  5'- cUCCGCGACgccaUGCGgguccagcUgGAGGUCGGGCa -3'
miRNA:   3'- aAGGCGUUG----AUGC--------AgCUCCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 71236 0.72 0.765812
Target:  5'- -aCCGUGGCcucgACGUCGGGGUCGaAGgGg -3'
miRNA:   3'- aaGGCGUUGa---UGCAGCUCCAGC-UCgC- -5'
9051 3' -54.9 NC_002512.2 + 101551 0.73 0.733674
Target:  5'- -gCgGCGGCggggacggagucgAgGUCGAGGUCGAGCGu -3'
miRNA:   3'- aaGgCGUUGa------------UgCAGCUCCAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 85685 0.74 0.668796
Target:  5'- gUUCCGCGGaugACGUCGAGGUgacgGAGCu -3'
miRNA:   3'- -AAGGCGUUga-UGCAGCUCCAg---CUCGc -5'
9051 3' -54.9 NC_002512.2 + 2111 0.74 0.668796
Target:  5'- -gCCGCGGCU-CGgucgCGGGcGUCGAGCGu -3'
miRNA:   3'- aaGGCGUUGAuGCa---GCUC-CAGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 110778 0.76 0.526717
Target:  5'- cUCCGCAGCUGCGcCGAGGccgcccgcaccuccUCGcGCGa -3'
miRNA:   3'- aAGGCGUUGAUGCaGCUCC--------------AGCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.