miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 11433 0.66 0.682976
Target:  5'- cGCgGUCCgcgggGACGCC-GCggACGGGGGCc -3'
miRNA:   3'- -CGgCGGG-----CUGCGGcCGa-UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 11671 0.71 0.397319
Target:  5'- cGCgGCCCGcCG-CGGCccgagGCGGGGGCc -3'
miRNA:   3'- -CGgCGGGCuGCgGCCGa----UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 12109 0.67 0.617225
Target:  5'- aGCCgGCCgCGACcCCGGCgACGGggacGGGCc -3'
miRNA:   3'- -CGG-CGG-GCUGcGGCCGaUGCU----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 12280 0.67 0.636056
Target:  5'- cGCCGCCCGAguCGCCGaCgaccccCGAGgcGGCg -3'
miRNA:   3'- -CGGCGGGCU--GCGGCcGau----GCUC--CCGa -5'
9051 5' -63.8 NC_002512.2 + 12874 0.67 0.636056
Target:  5'- gGCUGCugaagCCGACGCgGGagaACGAGaGGCg -3'
miRNA:   3'- -CGGCG-----GGCUGCGgCCga-UGCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 13331 0.67 0.607821
Target:  5'- cGCCGCaugcuggcguUCGcGCGCCGcuGCUACGAcucGGGCg -3'
miRNA:   3'- -CGGCG----------GGC-UGCGGC--CGAUGCU---CCCGa -5'
9051 5' -63.8 NC_002512.2 + 13414 0.76 0.20937
Target:  5'- cGCCuCCCuguggGACGCCGGCUACcuGGGCUu -3'
miRNA:   3'- -CGGcGGG-----CUGCGGCCGAUGcuCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 14414 0.71 0.416349
Target:  5'- aGgCGCCaggaggaguCGACGCCGGCgaugacccgcuccCGGGGGCUg -3'
miRNA:   3'- -CgGCGG---------GCUGCGGCCGau-----------GCUCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 15117 0.72 0.352261
Target:  5'- gGgCGaCCGGCGCCGGaCUGCGAcGGCa -3'
miRNA:   3'- -CgGCgGGCUGCGGCC-GAUGCUcCCGa -5'
9051 5' -63.8 NC_002512.2 + 15226 0.68 0.561141
Target:  5'- gGUCGCCgaGGCGCCGGgaggagagaCUGCGAGgcGGCc -3'
miRNA:   3'- -CGGCGGg-CUGCGGCC---------GAUGCUC--CCGa -5'
9051 5' -63.8 NC_002512.2 + 15669 0.71 0.374331
Target:  5'- aGCCGCCUGACGUCccggGGCaGCGGGcGCa -3'
miRNA:   3'- -CGGCGGGCUGCGG----CCGaUGCUCcCGa -5'
9051 5' -63.8 NC_002512.2 + 16464 0.66 0.705233
Target:  5'- gGCCGCCuCGggcggagacgacagaGCGUaUGGCgcaGCGGGGGCc -3'
miRNA:   3'- -CGGCGG-GC---------------UGCG-GCCGa--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 17499 0.68 0.561141
Target:  5'- gGCCGCCuccucgaucuCGACGUCGGCgucgGCGuaGGCg -3'
miRNA:   3'- -CGGCGG----------GCUGCGGCCGa---UGCucCCGa -5'
9051 5' -63.8 NC_002512.2 + 20868 0.68 0.561141
Target:  5'- gGCCGCCCcgcucAUGgCGGCgacgACGGGGGa- -3'
miRNA:   3'- -CGGCGGGc----UGCgGCCGa---UGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 21229 0.75 0.224059
Target:  5'- cGCCGCCCGGgG-CGGagACGGGGGCg -3'
miRNA:   3'- -CGGCGGGCUgCgGCCgaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 21909 0.68 0.589064
Target:  5'- aGCaCGUCuCGuCGCC-GCUACGgAGGGCg -3'
miRNA:   3'- -CG-GCGG-GCuGCGGcCGAUGC-UCCCGa -5'
9051 5' -63.8 NC_002512.2 + 24183 0.67 0.602185
Target:  5'- cGCCGCCUGuCGCCGGUgucguuCGAcaggacggugacgccGGaGCUg -3'
miRNA:   3'- -CGGCGGGCuGCGGCCGau----GCU---------------CC-CGA- -5'
9051 5' -63.8 NC_002512.2 + 25475 0.66 0.664268
Target:  5'- cGCCGCCguaUGAgGUugaGGCgauCGAGGGCc -3'
miRNA:   3'- -CGGCGG---GCUgCGg--CCGau-GCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 27014 0.66 0.701542
Target:  5'- cGCCGUUCGugGCCaucaugaGCUACGAcaGCUa -3'
miRNA:   3'- -CGGCGGGCugCGGc------CGAUGCUccCGA- -5'
9051 5' -63.8 NC_002512.2 + 27763 0.67 0.626639
Target:  5'- gGCCGagaCCGGCGCCaccaGCUgACGAGGacGCg -3'
miRNA:   3'- -CGGCg--GGCUGCGGc---CGA-UGCUCC--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.