miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 159 0.67 0.645471
Target:  5'- cGCCGgCgGaggagcgcGCGCCGGgagggACGGGGGCg -3'
miRNA:   3'- -CGGCgGgC--------UGCGGCCga---UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 2013 0.68 0.533592
Target:  5'- cGUCGCCUGA-GCCGGCaccAgGAGGaGCg -3'
miRNA:   3'- -CGGCGGGCUgCGGCCGa--UgCUCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 2278 0.73 0.317568
Target:  5'- cGCCGCCCGcCcuCCGGCcgcUGCGGGuGGCg -3'
miRNA:   3'- -CGGCGGGCuGc-GGCCG---AUGCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 2517 0.71 0.413139
Target:  5'- uCC-CCCGACGCCGGCgGCcccGGGCc -3'
miRNA:   3'- cGGcGGGCUGCGGCCGaUGcu-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 2799 0.71 0.397319
Target:  5'- cCCGgCCGGCgGCCGGCgggacccgGCGcGGGCg -3'
miRNA:   3'- cGGCgGGCUG-CGGCCGa-------UGCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 3186 0.71 0.40518
Target:  5'- cGUCGCUCGACGCCGccGCggGCGAcGGCc -3'
miRNA:   3'- -CGGCGGGCUGCGGC--CGa-UGCUcCCGa -5'
9051 5' -63.8 NC_002512.2 + 4553 0.66 0.664268
Target:  5'- gGCgGCgCGACcgaCGGCUGCGgcgucuGGGGCg -3'
miRNA:   3'- -CGgCGgGCUGcg-GCCGAUGC------UCCCGa -5'
9051 5' -63.8 NC_002512.2 + 4779 0.68 0.570413
Target:  5'- -gCGCCuCGagcuGCGCCGGUUGCGAcGGUUg -3'
miRNA:   3'- cgGCGG-GC----UGCGGCCGAUGCUcCCGA- -5'
9051 5' -63.8 NC_002512.2 + 4870 0.76 0.186737
Target:  5'- cGCCGCgugCGGCGCCGGCUG-GAGGaGCg -3'
miRNA:   3'- -CGGCGg--GCUGCGGCCGAUgCUCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 5070 0.71 0.394979
Target:  5'- cCCGCCCGcggcguuggucgucGuCGCCGGCgucgGCGcGGGCg -3'
miRNA:   3'- cGGCGGGC--------------U-GCGGCCGa---UGCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 5892 0.67 0.636056
Target:  5'- cGUCGCUCGugGaCGGCggggcgcGCGGGGGa- -3'
miRNA:   3'- -CGGCGGGCugCgGCCGa------UGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 6326 0.68 0.530862
Target:  5'- cGCCGCCCGcggggggaccgggcGCgggGCCGGCgggcCGcGGGCg -3'
miRNA:   3'- -CGGCGGGC--------------UG---CGGCCGau--GCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 7353 0.67 0.626639
Target:  5'- aGCCccgGCCCaccgcGACGgCGGCcGCGGcGGGCg -3'
miRNA:   3'- -CGG---CGGG-----CUGCgGCCGaUGCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 8816 0.66 0.654877
Target:  5'- cGCCGuUCCGcCGCCGgaGCUugGGccagacGGGCUc -3'
miRNA:   3'- -CGGC-GGGCuGCGGC--CGAugCU------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 9582 0.66 0.664268
Target:  5'- gGCC-CCCGGCcccCCGGCggcuCGGcGGGCa -3'
miRNA:   3'- -CGGcGGGCUGc--GGCCGau--GCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 10349 0.66 0.701542
Target:  5'- cCCGUCCGgugggcACGCCGaCgaagACGGGGGUg -3'
miRNA:   3'- cGGCGGGC------UGCGGCcGa---UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 10429 0.67 0.617225
Target:  5'- aCCGCgUCGuCGCCgucgGGC-ACGGGGGCg -3'
miRNA:   3'- cGGCG-GGCuGCGG----CCGaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 10472 0.73 0.298018
Target:  5'- cGCCGCCCcgGGCGUgGGCgucGCGGcGGGCc -3'
miRNA:   3'- -CGGCGGG--CUGCGgCCGa--UGCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 10989 0.75 0.244995
Target:  5'- aGCCGCCCcGCGUgGcGCgcgAUGAGGGCg -3'
miRNA:   3'- -CGGCGGGcUGCGgC-CGa--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 11325 0.7 0.471423
Target:  5'- gGCCGacgcgaCgGACGCCGGCgggagGCGAGaGCg -3'
miRNA:   3'- -CGGCg-----GgCUGCGGCCGa----UGCUCcCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.