miRNA display CGI


Results 1 - 20 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 146689 0.65 0.707996
Target:  5'- cCCGCCCcGCGCgCGGacgGCGAcggagacgacggcgGGGCg -3'
miRNA:   3'- cGGCGGGcUGCG-GCCga-UGCU--------------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 121064 0.65 0.707076
Target:  5'- cGCCGCCCGAgGCgCGGaggaagcggacccacGCGGagauccuguacucGGGCUa -3'
miRNA:   3'- -CGGCGGGCUgCG-GCCga-------------UGCU-------------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 137222 0.65 0.707996
Target:  5'- aGCCGgaucucuccccgguCCCGACGaggacaCCGGCgGCGAGcGCUg -3'
miRNA:   3'- -CGGC--------------GGGCUGC------GGCCGaUGCUCcCGA- -5'
9051 5' -63.8 NC_002512.2 + 201649 0.65 0.709835
Target:  5'- cGCgGCgCGACGgccCCGGCcgcgguuccuucuUcgGCGAGGGCg -3'
miRNA:   3'- -CGgCGgGCUGC---GGCCG-------------A--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 9582 0.66 0.664268
Target:  5'- gGCC-CCCGGCcccCCGGCggcuCGGcGGGCa -3'
miRNA:   3'- -CGGcGGGCUGc--GGCCGau--GCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 89109 0.66 0.654877
Target:  5'- cGCgCGUCUGGuCGgCGGUcguUugGAGGGCg -3'
miRNA:   3'- -CG-GCGGGCU-GCgGCCG---AugCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 30402 0.66 0.664268
Target:  5'- cGCgGCCCuGACGgaCGGggACGcGGGCg -3'
miRNA:   3'- -CGgCGGG-CUGCg-GCCgaUGCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 130488 0.66 0.654877
Target:  5'- --gGCCCGAUccgucgcaGCCgGGCUGCGAGGccguGCg -3'
miRNA:   3'- cggCGGGCUG--------CGG-CCGAUGCUCC----CGa -5'
9051 5' -63.8 NC_002512.2 + 124494 0.66 0.673636
Target:  5'- uGCCGCCCaagagcguCGCCGGgU-CGAuGGGUc -3'
miRNA:   3'- -CGGCGGGcu------GCGGCCgAuGCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 70930 0.66 0.673636
Target:  5'- aCCGCUCGcCGCCGuuGCUGacCGAGaGGCc -3'
miRNA:   3'- cGGCGGGCuGCGGC--CGAU--GCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 49456 0.66 0.673636
Target:  5'- cGCCGCCCGggGCGCCGucacCGAGGaCg -3'
miRNA:   3'- -CGGCGGGC--UGCGGCcgauGCUCCcGa -5'
9051 5' -63.8 NC_002512.2 + 89367 0.66 0.654877
Target:  5'- gGCCGuCCUGGCGCCG--UACGuGGGa- -3'
miRNA:   3'- -CGGC-GGGCUGCGGCcgAUGCuCCCga -5'
9051 5' -63.8 NC_002512.2 + 152114 0.66 0.673636
Target:  5'- uCCGCCCGAC-CCGGagucUGGGGGa- -3'
miRNA:   3'- cGGCGGGCUGcGGCCgau-GCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 85268 0.66 0.673636
Target:  5'- gGCCGCCaCGuccaGCgCGGCgcggaccucgUGCGAGGGg- -3'
miRNA:   3'- -CGGCGG-GCug--CG-GCCG----------AUGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 4553 0.66 0.664268
Target:  5'- gGCgGCgCGACcgaCGGCUGCGgcgucuGGGGCg -3'
miRNA:   3'- -CGgCGgGCUGcg-GCCGAUGC------UCCCGa -5'
9051 5' -63.8 NC_002512.2 + 8816 0.66 0.654877
Target:  5'- cGCCGuUCCGcCGCCGgaGCUugGGccagacGGGCUc -3'
miRNA:   3'- -CGGC-GGGCuGCGGC--CGAugCU------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 122966 0.66 0.673636
Target:  5'- -gCGCUCG-UGCgGGUgcGCGAGGGCg -3'
miRNA:   3'- cgGCGGGCuGCGgCCGa-UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 30629 0.66 0.677375
Target:  5'- gGCCGCCCGACauCCagagacucgacaucgGGCUGCGccggaucuaccGGGCg -3'
miRNA:   3'- -CGGCGGGCUGc-GG---------------CCGAUGCu----------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 25475 0.66 0.664268
Target:  5'- cGCCGCCguaUGAgGUugaGGCgauCGAGGGCc -3'
miRNA:   3'- -CGGCGG---GCUgCGg--CCGau-GCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 63450 0.66 0.664268
Target:  5'- cGUCGCCCccggagGACGgCGGggAaGAGGGCa -3'
miRNA:   3'- -CGGCGGG------CUGCgGCCgaUgCUCCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.