miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 136191 0.72 0.33113
Target:  5'- gGUCGCCgggaucgcguCGACGCCGGCggccuggugcGCGGGGGUc -3'
miRNA:   3'- -CGGCGG----------GCUGCGGCCGa---------UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 122043 0.74 0.248272
Target:  5'- cGCaCGCCCGgggcgGCGUCGGCggcugugacgacaGCGGGGGCUg -3'
miRNA:   3'- -CG-GCGGGC-----UGCGGCCGa------------UGCUCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 28545 0.74 0.250477
Target:  5'- cGCCGCCCGAUGUCGGCcacgcugACGucGcGGCa -3'
miRNA:   3'- -CGGCGGGCUGCGGCCGa------UGCu-C-CCGa -5'
9051 5' -63.8 NC_002512.2 + 45450 0.74 0.279413
Target:  5'- cCUGUCCGACGCCGGCgGCGGccGaGGCg -3'
miRNA:   3'- cGGCGGGCUGCGGCCGaUGCU--C-CCGa -5'
9051 5' -63.8 NC_002512.2 + 10472 0.73 0.298018
Target:  5'- cGCCGCCCcgGGCGUgGGCgucGCGGcGGGCc -3'
miRNA:   3'- -CGGCGGG--CUGCGgCCGa--UGCU-CCCGa -5'
9051 5' -63.8 NC_002512.2 + 31728 0.73 0.298018
Target:  5'- cGCCGgCCGGCGCCgacccGGCccGCGcGGGGCUc -3'
miRNA:   3'- -CGGCgGGCUGCGG-----CCGa-UGC-UCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 82334 0.73 0.304429
Target:  5'- gGCCGcCCCGGCggguagcgGUgGGCgUGCGGGGGCg -3'
miRNA:   3'- -CGGC-GGGCUG--------CGgCCG-AUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 2278 0.73 0.317568
Target:  5'- cGCCGCCCGcCcuCCGGCcgcUGCGGGuGGCg -3'
miRNA:   3'- -CGGCGGGCuGc-GGCCG---AUGCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 139783 0.73 0.317568
Target:  5'- aUCGUCCGGCGCacccuccaGGCcgGCGGGGGCc -3'
miRNA:   3'- cGGCGGGCUGCGg-------CCGa-UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 10989 0.75 0.244995
Target:  5'- aGCCGCCCcGCGUgGcGCgcgAUGAGGGCg -3'
miRNA:   3'- -CGGCGGGcUGCGgC-CGa--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 21229 0.75 0.224059
Target:  5'- cGCCGCCCGGgG-CGGagACGGGGGCg -3'
miRNA:   3'- -CGGCGGGCUgCgGCCgaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 142028 0.75 0.219068
Target:  5'- cGCgGCCgGGgGCCGGCgacccgccGCGAGGGCc -3'
miRNA:   3'- -CGgCGGgCUgCGGCCGa-------UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 103235 0.82 0.078952
Target:  5'- cGCCGCCCGuCGaCGGCcgcgGCGAGGGCa -3'
miRNA:   3'- -CGGCGGGCuGCgGCCGa---UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 138013 0.8 0.113739
Target:  5'- cGCCGCCCG-CGCCGGaCggcggccuCGGGGGCa -3'
miRNA:   3'- -CGGCGGGCuGCGGCC-Gau------GCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 49757 0.78 0.159057
Target:  5'- aCCGCCCGACGCUGGacgccaucauggacACGGGGGCc -3'
miRNA:   3'- cGGCGGGCUGCGGCCga------------UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 97358 0.77 0.165899
Target:  5'- cGCCGCCCGcggagcggggaccGCGgCGGCcggagACGGGGGCg -3'
miRNA:   3'- -CGGCGGGC-------------UGCgGCCGa----UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 4870 0.76 0.186737
Target:  5'- cGCCGCgugCGGCGCCGGCUG-GAGGaGCg -3'
miRNA:   3'- -CGGCGg--GCUGCGGCCGAUgCUCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 115703 0.76 0.191084
Target:  5'- cGCCggGCCCGACGCCGGCgccacCGAGGa-- -3'
miRNA:   3'- -CGG--CGGGCUGCGGCCGau---GCUCCcga -5'
9051 5' -63.8 NC_002512.2 + 118669 0.76 0.201881
Target:  5'- gGCCGCCCgucaucgucugucccGACGUCGGCgcCGuGGGCUu -3'
miRNA:   3'- -CGGCGGG---------------CUGCGGCCGauGCuCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 13414 0.76 0.20937
Target:  5'- cGCCuCCCuguggGACGCCGGCUACcuGGGCUu -3'
miRNA:   3'- -CGGcGGG-----CUGCGGCCGAUGcuCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.