miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 145354 1.09 0.001006
Target:  5'- cGCCGCCCGACGCCGGCUACGAGGGCUa -3'
miRNA:   3'- -CGGCGGGCUGCGGCCGAUGCUCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 139270 0.83 0.073335
Target:  5'- cGCCGCCCGGCGCgCGGggGCGAagggGGGCg -3'
miRNA:   3'- -CGGCGGGCUGCG-GCCgaUGCU----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 103235 0.82 0.078952
Target:  5'- cGCCGCCCGuCGaCGGCcgcgGCGAGGGCa -3'
miRNA:   3'- -CGGCGGGCuGCgGCCGa---UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 227925 0.81 0.087084
Target:  5'- cGCCGCcuCCGACGCCGGCggacgagGCGGGGGa- -3'
miRNA:   3'- -CGGCG--GGCUGCGGCCGa------UGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 138013 0.8 0.113739
Target:  5'- cGCCGCCCG-CGCCGGaCggcggccuCGGGGGCa -3'
miRNA:   3'- -CGGCGGGCuGCGGCC-Gau------GCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 224798 0.8 0.115672
Target:  5'- cCCGCgCCGACGCCGGCgacgACGAccaacgccgcgggcGGGCUg -3'
miRNA:   3'- cGGCG-GGCUGCGGCCGa---UGCU--------------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 217084 0.79 0.128232
Target:  5'- aGCCGCCCGAgcaucCGCaggGGCaGCGGGGGCg -3'
miRNA:   3'- -CGGCGGGCU-----GCGg--CCGaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 164447 0.78 0.141037
Target:  5'- aGCCGCUCGGCGCCcucgGCGGGGGCg -3'
miRNA:   3'- -CGGCGGGCUGCGGccgaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 108428 0.78 0.14787
Target:  5'- cGCCGCCCGGgGCCGGggGcCGGGGGg- -3'
miRNA:   3'- -CGGCGGGCUgCGGCCgaU-GCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 148527 0.78 0.155003
Target:  5'- cGCCGCCCGcC-CCGGCcGCGAGGGa- -3'
miRNA:   3'- -CGGCGGGCuGcGGCCGaUGCUCCCga -5'
9051 5' -63.8 NC_002512.2 + 49757 0.78 0.159057
Target:  5'- aCCGCCCGACGCUGGacgccaucauggacACGGGGGCc -3'
miRNA:   3'- cGGCGGGCUGCGGCCga------------UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 97358 0.77 0.165899
Target:  5'- cGCCGCCCGcggagcggggaccGCGgCGGCcggagACGGGGGCg -3'
miRNA:   3'- -CGGCGGGC-------------UGCgGCCGa----UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 124464 0.77 0.169813
Target:  5'- aGCCGCugcugagCCGGCGCCacgacaacGGCUACGAGGuGCg -3'
miRNA:   3'- -CGGCG-------GGCUGCGG--------CCGAUGCUCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 166440 0.77 0.17021
Target:  5'- cGCCGUCCuccgggggcgacGGCGCCgGGCU-CGAGGGCg -3'
miRNA:   3'- -CGGCGGG------------CUGCGG-CCGAuGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 204969 0.77 0.174619
Target:  5'- gGCCgaGCCCGACGCCgcgGGCgacggggaccggaagGCGGGGGCg -3'
miRNA:   3'- -CGG--CGGGCUGCGG---CCGa--------------UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 4870 0.76 0.186737
Target:  5'- cGCCGCgugCGGCGCCGGCUG-GAGGaGCg -3'
miRNA:   3'- -CGGCGg--GCUGCGGCCGAUgCUCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 91876 0.76 0.191084
Target:  5'- cGCCGUCCGGCGCgGGCgGCGGcGcGGCg -3'
miRNA:   3'- -CGGCGGGCUGCGgCCGaUGCU-C-CCGa -5'
9051 5' -63.8 NC_002512.2 + 115703 0.76 0.191084
Target:  5'- cGCCggGCCCGACGCCGGCgccacCGAGGa-- -3'
miRNA:   3'- -CGG--CGGGCUGCGGCCGau---GCUCCcga -5'
9051 5' -63.8 NC_002512.2 + 227681 0.76 0.191084
Target:  5'- cGCCGCCggcgaccgagaCGACGaCGGCgGCGGGGGCg -3'
miRNA:   3'- -CGGCGG-----------GCUGCgGCCGaUGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 118669 0.76 0.201881
Target:  5'- gGCCGCCCgucaucgucugucccGACGUCGGCgcCGuGGGCUu -3'
miRNA:   3'- -CGGCGGG---------------CUGCGGCCGauGCuCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.