miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 122290 0.66 0.910573
Target:  5'- gCCCgUCAGCgagCCG-CACgUCGACGa- -3'
miRNA:   3'- -GGGaGGUCGa--GGCaGUGgAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 176828 0.67 0.90711
Target:  5'- gUCUCgCAGCcucgccgagaagugaUCCGUCACCUucaccgUGAUGUCc -3'
miRNA:   3'- gGGAG-GUCG---------------AGGCAGUGGA------GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 118665 0.67 0.904759
Target:  5'- gCCCggCC-GC-CCGUCAUCgucuguccCGACGUCg -3'
miRNA:   3'- -GGGa-GGuCGaGGCAGUGGa-------GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 100112 0.67 0.904759
Target:  5'- gCCCgggaCgAGCucUCCGUCACCgUCGugGa- -3'
miRNA:   3'- -GGGa---GgUCG--AGGCAGUGG-AGCugCag -5'
9055 5' -57.9 NC_002512.2 + 126515 0.67 0.904759
Target:  5'- gCCUCggCGGCUCCGgcggCcugACCUCGAcCGUg -3'
miRNA:   3'- gGGAG--GUCGAGGCa---G---UGGAGCU-GCAg -5'
9055 5' -57.9 NC_002512.2 + 34600 0.67 0.904759
Target:  5'- gCCUCCugauGGCgUCCGUCccgACUUCGAgUGUCc -3'
miRNA:   3'- gGGAGG----UCG-AGGCAG---UGGAGCU-GCAG- -5'
9055 5' -57.9 NC_002512.2 + 194609 0.67 0.904759
Target:  5'- uCCCUCCGccgccGCggCCGUCGCCgCGGgggaccugccCGUCc -3'
miRNA:   3'- -GGGAGGU-----CGa-GGCAGUGGaGCU----------GCAG- -5'
9055 5' -57.9 NC_002512.2 + 196569 0.67 0.904759
Target:  5'- cCCCUCUccuGGCcggacggcgugUCCGUCAUgCUCauGACGUCc -3'
miRNA:   3'- -GGGAGG---UCG-----------AGGCAGUG-GAG--CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 186273 0.67 0.898735
Target:  5'- uUCUUCAGCuUCCGcaGCCUCcGCGUCc -3'
miRNA:   3'- gGGAGGUCG-AGGCagUGGAGcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 129634 0.67 0.898735
Target:  5'- cUCCUCCcGCUCUccgaggacgcgGUCGCCgcccgUCGACGcCg -3'
miRNA:   3'- -GGGAGGuCGAGG-----------CAGUGG-----AGCUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 138279 0.67 0.898734
Target:  5'- aCCUUCCuguGCgUCCG-CAgCUCGugGUg -3'
miRNA:   3'- -GGGAGGu--CG-AGGCaGUgGAGCugCAg -5'
9055 5' -57.9 NC_002512.2 + 134126 0.67 0.898734
Target:  5'- cCCCgUCCAgGCggCCGUCGCggCGcGCGUCc -3'
miRNA:   3'- -GGG-AGGU-CGa-GGCAGUGgaGC-UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 218828 0.67 0.89812
Target:  5'- gCCCUCCGcggcccuGCUCUGcgacuUCGCCgaCGAgGUCg -3'
miRNA:   3'- -GGGAGGU-------CGAGGC-----AGUGGa-GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 127550 0.67 0.895019
Target:  5'- gCCCggacCCGGCUCguCGUCcgggaggcccgacggACCguccgCGACGUCg -3'
miRNA:   3'- -GGGa---GGUCGAG--GCAG---------------UGGa----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 1336 0.67 0.892501
Target:  5'- gCgUCCGGCUgCCGUCcGCCUCccguguCGUCc -3'
miRNA:   3'- gGgAGGUCGA-GGCAG-UGGAGcu----GCAG- -5'
9055 5' -57.9 NC_002512.2 + 180903 0.67 0.892501
Target:  5'- gUCUUCCAGCUCCGcguucucCGCCacgaUCGACuccaGUCu -3'
miRNA:   3'- -GGGAGGUCGAGGCa------GUGG----AGCUG----CAG- -5'
9055 5' -57.9 NC_002512.2 + 161571 0.67 0.892501
Target:  5'- uUCUUCAGCUUCGUCGacgugCggGACGUCa -3'
miRNA:   3'- gGGAGGUCGAGGCAGUg----GagCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 202943 0.67 0.892501
Target:  5'- --gUCUGGCUCCGcCGCCgguaCGAgGUCa -3'
miRNA:   3'- gggAGGUCGAGGCaGUGGa---GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 157104 0.67 0.892501
Target:  5'- gCCCgucCCGGCgaCGUC-CCUccCGGCGUCg -3'
miRNA:   3'- -GGGa--GGUCGagGCAGuGGA--GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 102092 0.67 0.886061
Target:  5'- uUCUUCCGGCa-CGUCucccugugcgGCCUCGGcCGUCg -3'
miRNA:   3'- -GGGAGGUCGagGCAG----------UGGAGCU-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.