miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 65139 0.66 0.921558
Target:  5'- gCgUCCAuggcggcgcGCUaCCGgu-CCUCGACGUCg -3'
miRNA:   3'- gGgAGGU---------CGA-GGCaguGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 105356 0.66 0.921558
Target:  5'- ---aCCAGCgCCGUCgucuggcccGCCUUGACGUa -3'
miRNA:   3'- gggaGGUCGaGGCAG---------UGGAGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 112011 0.66 0.921558
Target:  5'- gCCC-CCGGCgUCCGUCuugcgGCCga-ACGUCa -3'
miRNA:   3'- -GGGaGGUCG-AGGCAG-----UGGagcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 199163 0.66 0.921558
Target:  5'- gCCCUUCGGCagaUCCagguCCUCGACGg- -3'
miRNA:   3'- -GGGAGGUCG---AGGcaguGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 210024 0.66 0.921558
Target:  5'- aCgUCCAGCcguaCCGUCgcGCCUUccgcuccgggGACGUCg -3'
miRNA:   3'- gGgAGGUCGa---GGCAG--UGGAG----------CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 143618 0.66 0.921029
Target:  5'- gUCUCCGGCgUUCGUCccuccccGCCUCGGCc-- -3'
miRNA:   3'- gGGAGGUCG-AGGCAG-------UGGAGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 91016 0.66 0.916173
Target:  5'- -aCUCCAuGUUCCGcuUCAuCCUggaCGGCGUCa -3'
miRNA:   3'- ggGAGGU-CGAGGC--AGU-GGA---GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 177255 0.66 0.916173
Target:  5'- gCCUCCAGCUCCucccgcagggaGUCcagggacuugGCCaggUUGGCGUUg -3'
miRNA:   3'- gGGAGGUCGAGG-----------CAG----------UGG---AGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 147953 0.66 0.916173
Target:  5'- cCCCUCC-GC-CC-UCGCCgUCGuCGUCc -3'
miRNA:   3'- -GGGAGGuCGaGGcAGUGG-AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 109077 0.66 0.916173
Target:  5'- cCCCgcgcgCCAGgUCCGUCgacACCgUGGcCGUCa -3'
miRNA:   3'- -GGGa----GGUCgAGGCAG---UGGaGCU-GCAG- -5'
9055 5' -57.9 NC_002512.2 + 82997 0.66 0.916173
Target:  5'- gCCUCCAGCUgCGcCuggGCCUCcgGGCGg- -3'
miRNA:   3'- gGGAGGUCGAgGCaG---UGGAG--CUGCag -5'
9055 5' -57.9 NC_002512.2 + 34672 0.66 0.912838
Target:  5'- aCCUCCGGC--CGUC-CCUCagacaccggcacccaGGCGUCg -3'
miRNA:   3'- gGGAGGUCGagGCAGuGGAG---------------CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 44013 0.66 0.910573
Target:  5'- aCCUgCCAGCggcCCGaggCGCCcuccUCGACGUa -3'
miRNA:   3'- gGGA-GGUCGa--GGCa--GUGG----AGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 164174 0.66 0.910573
Target:  5'- cCCCgccCUAuCUCCGggGCCUCGACGa- -3'
miRNA:   3'- -GGGa--GGUcGAGGCagUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 136137 0.66 0.910573
Target:  5'- uCCCUCCgAGCccUCCGUC-CC-CGucccCGUCc -3'
miRNA:   3'- -GGGAGG-UCG--AGGCAGuGGaGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 128376 0.66 0.910573
Target:  5'- gCCCUCC----CCGUCGCCggCGGCGg- -3'
miRNA:   3'- -GGGAGGucgaGGCAGUGGa-GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 122290 0.66 0.910573
Target:  5'- gCCCgUCAGCgagCCG-CACgUCGACGa- -3'
miRNA:   3'- -GGGaGGUCGa--GGCaGUGgAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 225258 0.66 0.910573
Target:  5'- -gCUCCuuCUCCGcCAggagggcguCCUCGGCGUCc -3'
miRNA:   3'- ggGAGGucGAGGCaGU---------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 151035 0.66 0.910573
Target:  5'- aCCUCgaggCGGCggcCCGUCAcgcgguCCUCGACGg- -3'
miRNA:   3'- gGGAG----GUCGa--GGCAGU------GGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 157696 0.66 0.910573
Target:  5'- aCUUCC-GCgCCuUCGCCUCGGCGg- -3'
miRNA:   3'- gGGAGGuCGaGGcAGUGGAGCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.