miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 108160 0.73 0.586977
Target:  5'- cUCCUCCGGCgucgCCGgCGCCUucugCGGCGUUc -3'
miRNA:   3'- -GGGAGGUCGa---GGCaGUGGA----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 226679 0.73 0.596645
Target:  5'- aCUCUCUgAGCgccgggCCGUCGCCcgcggCGGCGUCg -3'
miRNA:   3'- -GGGAGG-UCGa-----GGCAGUGGa----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 122756 0.72 0.635487
Target:  5'- gCCCUCUc-CUCCGUCACCuaUCGGguCGUCu -3'
miRNA:   3'- -GGGAGGucGAGGCAGUGG--AGCU--GCAG- -5'
9055 5' -57.9 NC_002512.2 + 137124 0.72 0.635487
Target:  5'- aUCUCUuguAGUUCCGUCGCC-CGuCGUCg -3'
miRNA:   3'- gGGAGG---UCGAGGCAGUGGaGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 98356 0.72 0.645208
Target:  5'- cCCCUCC-GCcUCGUCucCCUCcGGCGUCg -3'
miRNA:   3'- -GGGAGGuCGaGGCAGu-GGAG-CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 143715 0.72 0.645208
Target:  5'- aCCUCCAGCUCCcgcagCaggGCCUCGgaggcggccgcgGCGUCg -3'
miRNA:   3'- gGGAGGUCGAGGca---G---UGGAGC------------UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 209744 0.72 0.645208
Target:  5'- aCCUUCCGGUacggacagCCGUCGCgCUCcGCGUCu -3'
miRNA:   3'- -GGGAGGUCGa-------GGCAGUG-GAGcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 182499 0.72 0.65492
Target:  5'- gCgUCCAGCUCCGUguCCUCcGCG-Cg -3'
miRNA:   3'- gGgAGGUCGAGGCAguGGAGcUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 97850 0.72 0.664615
Target:  5'- aCCCUCCGGUcCC-UgGCCgaCGACGUCg -3'
miRNA:   3'- -GGGAGGUCGaGGcAgUGGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 137312 0.71 0.673321
Target:  5'- cCCCUCCcggccgcGGCgUCGgCGCCUCcGACGUCg -3'
miRNA:   3'- -GGGAGG-------UCGaGGCaGUGGAG-CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 187254 0.71 0.683928
Target:  5'- aCCCUCCgcguugauGGCggaCGUCGCCUCGAaGUg -3'
miRNA:   3'- -GGGAGG--------UCGag-GCAGUGGAGCUgCAg -5'
9055 5' -57.9 NC_002512.2 + 21506 0.71 0.683928
Target:  5'- gCCUCgCAGCgUCGggcCACCUCGuCGUCg -3'
miRNA:   3'- gGGAG-GUCGaGGCa--GUGGAGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 184416 0.71 0.69353
Target:  5'- gCUCggCCuuCUCCGUCGCCUCGgccgccgccgGCGUCg -3'
miRNA:   3'- -GGGa-GGucGAGGCAGUGGAGC----------UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 223228 0.71 0.69353
Target:  5'- uCCCggCCGGCUCgGUgCACUUCGAC-UCc -3'
miRNA:   3'- -GGGa-GGUCGAGgCA-GUGGAGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 1932 0.71 0.707844
Target:  5'- cCUCUCCGGCUCCcccgcgcuccccCGCCUCGuccgccgGCGUCg -3'
miRNA:   3'- -GGGAGGUCGAGGca----------GUGGAGC-------UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 158628 0.71 0.712587
Target:  5'- gCCCUggaCGGCUCCGaccccuUCgACCcCGACGUCg -3'
miRNA:   3'- -GGGAg--GUCGAGGC------AG-UGGaGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 214369 0.71 0.712587
Target:  5'- gCCUUCUGGCUCCGggACCacaUCGuCGUCu -3'
miRNA:   3'- -GGGAGGUCGAGGCagUGG---AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 120098 0.71 0.712587
Target:  5'- gCCCUCCcccuGGCgcCCGUgCGCCUCGACc-- -3'
miRNA:   3'- -GGGAGG----UCGa-GGCA-GUGGAGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 95748 0.7 0.722028
Target:  5'- aCCCgUCCGGgUugaUCGUCaggacgaagaACCUCGGCGUCa -3'
miRNA:   3'- -GGG-AGGUCgA---GGCAG----------UGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 88981 0.7 0.722028
Target:  5'- gUCUCCGGCUUCGUgGCCggggggcCGACGg- -3'
miRNA:   3'- gGGAGGUCGAGGCAgUGGa------GCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.