miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 144188 1.12 0.002248
Target:  5'- aCCCUCCAGCUCCGUCACCUCGACGUCa -3'
miRNA:   3'- -GGGAGGUCGAGGCAGUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 24903 0.81 0.215061
Target:  5'- gCCUUCCGGUccCCGUCGCCcgCGGCGUCg -3'
miRNA:   3'- -GGGAGGUCGa-GGCAGUGGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 16226 0.81 0.241463
Target:  5'- cCCCUCCGcCUCCGUCAUCgUCGuCGUCg -3'
miRNA:   3'- -GGGAGGUcGAGGCAGUGG-AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 215537 0.8 0.270511
Target:  5'- gCCCUCCGggagauccuGCUggCCGUCggcGCCUCGGCGUCg -3'
miRNA:   3'- -GGGAGGU---------CGA--GGCAG---UGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 201310 0.79 0.302308
Target:  5'- aCCgCUCggauCAGCUCCGUCugCcgCGACGUCa -3'
miRNA:   3'- -GG-GAG----GUCGAGGCAGugGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 106314 0.78 0.315124
Target:  5'- gCCCgucgUCCAGC-CCGUCGcucucccCCUCGACGUCc -3'
miRNA:   3'- -GGG----AGGUCGaGGCAGU-------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 103655 0.78 0.322729
Target:  5'- gCCCUCCucGGCggCCacgagCGCCUCGACGUCg -3'
miRNA:   3'- -GGGAGG--UCGa-GGca---GUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 132652 0.77 0.390029
Target:  5'- gCCCg-CAGCUCCucucccagCGCCUCGACGUCc -3'
miRNA:   3'- -GGGagGUCGAGGca------GUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 178256 0.75 0.457057
Target:  5'- gUCUCCGGgUCCGUCGCCaugucuUCGAUGUUc -3'
miRNA:   3'- gGGAGGUCgAGGCAGUGG------AGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 1890 0.75 0.457057
Target:  5'- uCCCgUCCGGCUCCGgcccUCGgcCCUCGGCGcCg -3'
miRNA:   3'- -GGG-AGGUCGAGGC----AGU--GGAGCUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 5373 0.75 0.474764
Target:  5'- gUCCUCCGGCUCUGgcgCACC-CGACa-- -3'
miRNA:   3'- -GGGAGGUCGAGGCa--GUGGaGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 190978 0.75 0.492806
Target:  5'- cCCCUCCGGCgCCGUCGCCgagaaGACc-- -3'
miRNA:   3'- -GGGAGGUCGaGGCAGUGGag---CUGcag -5'
9055 5' -57.9 NC_002512.2 + 204682 0.74 0.501946
Target:  5'- uCgCUCCcGCUCCGUCGCggcggacgCGACGUCg -3'
miRNA:   3'- -GgGAGGuCGAGGCAGUGga------GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 71218 0.74 0.511158
Target:  5'- gCCaugaUCuCGGCgaugaCCGUgGCCUCGACGUCg -3'
miRNA:   3'- -GGg---AG-GUCGa----GGCAgUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 126194 0.74 0.511158
Target:  5'- cCCCUCCcGCcgcgUCCGcCGCCcucugCGACGUCg -3'
miRNA:   3'- -GGGAGGuCG----AGGCaGUGGa----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 29668 0.74 0.529787
Target:  5'- cUCCUCgGGCUCCGgcuCCUCGGgcuCGUCg -3'
miRNA:   3'- -GGGAGgUCGAGGCaguGGAGCU---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 2238 0.73 0.558176
Target:  5'- uUCCUCCGgacccgggcGCUCCGUCGCCU-GACcUCg -3'
miRNA:   3'- -GGGAGGU---------CGAGGCAGUGGAgCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 172108 0.73 0.558176
Target:  5'- aCCUCCAGCugcuccugUCCGgCACCgUCGACGa- -3'
miRNA:   3'- gGGAGGUCG--------AGGCaGUGG-AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 135226 0.73 0.567737
Target:  5'- gCCCcCCGGCcCCGggcCGCCUCGAggcCGUCg -3'
miRNA:   3'- -GGGaGGUCGaGGCa--GUGGAGCU---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 108160 0.73 0.586977
Target:  5'- cUCCUCCGGCgucgCCGgCGCCUucugCGGCGUUc -3'
miRNA:   3'- -GGGAGGUCGa---GGCaGUGGA----GCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.