miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 109077 0.66 0.916173
Target:  5'- cCCCgcgcgCCAGgUCCGUCgacACCgUGGcCGUCa -3'
miRNA:   3'- -GGGa----GGUCgAGGCAG---UGGaGCU-GCAG- -5'
9055 5' -57.9 NC_002512.2 + 57482 0.66 0.931682
Target:  5'- -gCUCCAGCcgggCgGUCAUCcCGGCGUg -3'
miRNA:   3'- ggGAGGUCGa---GgCAGUGGaGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 129030 0.66 0.931682
Target:  5'- aCCUgCAGUgcggcgUCGcgCACUUUGACGUCa -3'
miRNA:   3'- gGGAgGUCGa-----GGCa-GUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 44013 0.66 0.910573
Target:  5'- aCCUgCCAGCggcCCGaggCGCCcuccUCGACGUa -3'
miRNA:   3'- gGGA-GGUCGa--GGCa--GUGG----AGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 110482 0.66 0.931682
Target:  5'- uUgUUCAGCUCC-UC-CgUCGGCGUCa -3'
miRNA:   3'- gGgAGGUCGAGGcAGuGgAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 82997 0.66 0.916173
Target:  5'- gCCUCCAGCUgCGcCuggGCCUCcgGGCGg- -3'
miRNA:   3'- gGGAGGUCGAgGCaG---UGGAG--CUGCag -5'
9055 5' -57.9 NC_002512.2 + 106764 0.66 0.9252
Target:  5'- gCgUCCGGCUCuCGgcccgcggCACUggucggggucggggUCGACGUCg -3'
miRNA:   3'- gGgAGGUCGAG-GCa-------GUGG--------------AGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 65139 0.66 0.921558
Target:  5'- gCgUCCAuggcggcgcGCUaCCGgu-CCUCGACGUCg -3'
miRNA:   3'- gGgAGGU---------CGA-GGCaguGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 105356 0.66 0.921558
Target:  5'- ---aCCAGCgCCGUCgucuggcccGCCUUGACGUa -3'
miRNA:   3'- gggaGGUCGaGGCAG---------UGGAGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 63433 0.66 0.926728
Target:  5'- gCCCUCgAGCccggcgCCGUCGCCcccggaggaCGGCGg- -3'
miRNA:   3'- -GGGAGgUCGa-----GGCAGUGGa--------GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 112877 0.66 0.921558
Target:  5'- gUCCUCCGGCccggcguucucgUCgGUCGCC---GCGUCg -3'
miRNA:   3'- -GGGAGGUCG------------AGgCAGUGGagcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 184457 0.66 0.926728
Target:  5'- uCCCUCCGuCUCCGaCAUCguUCGAUGa- -3'
miRNA:   3'- -GGGAGGUcGAGGCaGUGG--AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 136137 0.66 0.910573
Target:  5'- uCCCUCCgAGCccUCCGUC-CC-CGucccCGUCc -3'
miRNA:   3'- -GGGAGG-UCG--AGGCAGuGGaGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 112011 0.66 0.921558
Target:  5'- gCCC-CCGGCgUCCGUCuugcgGCCga-ACGUCa -3'
miRNA:   3'- -GGGaGGUCG-AGGCAG-----UGGagcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 105909 0.66 0.923652
Target:  5'- gCUCUCCGGCgUCCGguggguCCUCGGggaggcggacucguuCGUCa -3'
miRNA:   3'- -GGGAGGUCG-AGGCagu---GGAGCU---------------GCAG- -5'
9055 5' -57.9 NC_002512.2 + 76765 0.66 0.926728
Target:  5'- gCCCgUCCcGC-CCGUCGCCacCGAauCGUCc -3'
miRNA:   3'- -GGG-AGGuCGaGGCAGUGGa-GCU--GCAG- -5'
9055 5' -57.9 NC_002512.2 + 140641 0.66 0.922085
Target:  5'- aCCUUCauccgcgagAGCUCCGUCGCCgucaccaacaagaugCGggccuGCGUCa -3'
miRNA:   3'- gGGAGG---------UCGAGGCAGUGGa--------------GC-----UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 122290 0.66 0.910573
Target:  5'- gCCCgUCAGCgagCCG-CACgUCGACGa- -3'
miRNA:   3'- -GGGaGGUCGa--GGCaGUGgAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 108531 0.66 0.931682
Target:  5'- gCCCUCUccgccguccaacGGCcCCGcCGCCggagCGAgGUCa -3'
miRNA:   3'- -GGGAGG------------UCGaGGCaGUGGa---GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 67940 0.66 0.923652
Target:  5'- uCCCUCCGGaCggagaggggucgcgCCGguUCGCCgUGGCGUCc -3'
miRNA:   3'- -GGGAGGUC-Ga-------------GGC--AGUGGaGCUGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.