miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 192422 0.7 0.740691
Target:  5'- aCCUUCCAGUUUC-UCGCgUCGGCGg- -3'
miRNA:   3'- -GGGAGGUCGAGGcAGUGgAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 97850 0.72 0.664615
Target:  5'- aCCCUCCGGUcCC-UgGCCgaCGACGUCg -3'
miRNA:   3'- -GGGAGGUCGaGGcAgUGGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 137312 0.71 0.673321
Target:  5'- cCCCUCCcggccgcGGCgUCGgCGCCUCcGACGUCg -3'
miRNA:   3'- -GGGAGG-------UCGaGGCaGUGGAG-CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 21506 0.71 0.683928
Target:  5'- gCCUCgCAGCgUCGggcCACCUCGuCGUCg -3'
miRNA:   3'- gGGAG-GUCGaGGCa--GUGGAGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 1932 0.71 0.707844
Target:  5'- cCUCUCCGGCUCCcccgcgcuccccCGCCUCGuccgccgGCGUCg -3'
miRNA:   3'- -GGGAGGUCGAGGca----------GUGGAGC-------UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 88981 0.7 0.722028
Target:  5'- gUCUCCGGCUUCGUgGCCggggggcCGACGg- -3'
miRNA:   3'- gGGAGGUCGAGGCAgUGGa------GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 95748 0.7 0.722028
Target:  5'- aCCCgUCCGGgUugaUCGUCaggacgaagaACCUCGGCGUCa -3'
miRNA:   3'- -GGG-AGGUCgA---GGCAG----------UGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 36224 0.7 0.731398
Target:  5'- gCCCUCCugGGUccccuUCCGUCuuaugacgACCUCGGCGg- -3'
miRNA:   3'- -GGGAGG--UCG-----AGGCAG--------UGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 95346 0.7 0.738839
Target:  5'- -gCUCCAgcucGCUCUGUCGCCacagcgggacgcCGACGUCg -3'
miRNA:   3'- ggGAGGU----CGAGGCAGUGGa-----------GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 98356 0.72 0.645208
Target:  5'- cCCCUCC-GCcUCGUCucCCUCcGGCGUCg -3'
miRNA:   3'- -GGGAGGuCGaGGCAGu-GGAG-CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 137124 0.72 0.635487
Target:  5'- aUCUCUuguAGUUCCGUCGCC-CGuCGUCg -3'
miRNA:   3'- gGGAGG---UCGAGGCAGUGGaGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 122756 0.72 0.635487
Target:  5'- gCCCUCUc-CUCCGUCACCuaUCGGguCGUCu -3'
miRNA:   3'- -GGGAGGucGAGGCAGUGG--AGCU--GCAG- -5'
9055 5' -57.9 NC_002512.2 + 16226 0.81 0.241463
Target:  5'- cCCCUCCGcCUCCGUCAUCgUCGuCGUCg -3'
miRNA:   3'- -GGGAGGUcGAGGCAGUGG-AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 1890 0.75 0.457057
Target:  5'- uCCCgUCCGGCUCCGgcccUCGgcCCUCGGCGcCg -3'
miRNA:   3'- -GGG-AGGUCGAGGC----AGU--GGAGCUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 5373 0.75 0.474764
Target:  5'- gUCCUCCGGCUCUGgcgCACC-CGACa-- -3'
miRNA:   3'- -GGGAGGUCGAGGCa--GUGGaGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 71218 0.74 0.511158
Target:  5'- gCCaugaUCuCGGCgaugaCCGUgGCCUCGACGUCg -3'
miRNA:   3'- -GGg---AG-GUCGa----GGCAgUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 126194 0.74 0.511158
Target:  5'- cCCCUCCcGCcgcgUCCGcCGCCcucugCGACGUCg -3'
miRNA:   3'- -GGGAGGuCG----AGGCaGUGGa----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 29668 0.74 0.529787
Target:  5'- cUCCUCgGGCUCCGgcuCCUCGGgcuCGUCg -3'
miRNA:   3'- -GGGAGgUCGAGGCaguGGAGCU---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 2238 0.73 0.558176
Target:  5'- uUCCUCCGgacccgggcGCUCCGUCGCCU-GACcUCg -3'
miRNA:   3'- -GGGAGGU---------CGAGGCAGUGGAgCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 135226 0.73 0.567737
Target:  5'- gCCCcCCGGCcCCGggcCGCCUCGAggcCGUCg -3'
miRNA:   3'- -GGGaGGUCGaGGCa--GUGGAGCU---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.