miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 185752 0.66 0.931682
Target:  5'- aCCUCUGG-UCCGUCgACCUCGucuACGcCu -3'
miRNA:   3'- gGGAGGUCgAGGCAG-UGGAGC---UGCaG- -5'
9055 5' -57.9 NC_002512.2 + 225258 0.66 0.910573
Target:  5'- -gCUCCuuCUCCGcCAggagggcguCCUCGGCGUCc -3'
miRNA:   3'- ggGAGGucGAGGCaGU---------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 176828 0.67 0.90711
Target:  5'- gUCUCgCAGCcucgccgagaagugaUCCGUCACCUucaccgUGAUGUCc -3'
miRNA:   3'- gGGAG-GUCG---------------AGGCAGUGGA------GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 144188 1.12 0.002248
Target:  5'- aCCCUCCAGCUCCGUCACCUCGACGUCa -3'
miRNA:   3'- -GGGAGGUCGAGGCAGUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 209463 0.66 0.926728
Target:  5'- aUCUUCGGCUCCGgcgaacaccggCugCUCGucgcCGUCu -3'
miRNA:   3'- gGGAGGUCGAGGCa----------GugGAGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 108101 0.66 0.926728
Target:  5'- gUCUUCGGCgUCCc-CGCCUCGGCGg- -3'
miRNA:   3'- gGGAGGUCG-AGGcaGUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 199163 0.66 0.921558
Target:  5'- gCCCUUCGGCagaUCCagguCCUCGACGg- -3'
miRNA:   3'- -GGGAGGUCG---AGGcaguGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 143618 0.66 0.921029
Target:  5'- gUCUCCGGCgUUCGUCccuccccGCCUCGGCc-- -3'
miRNA:   3'- gGGAGGUCG-AGGCAG-------UGGAGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 177255 0.66 0.916173
Target:  5'- gCCUCCAGCUCCucccgcagggaGUCcagggacuugGCCaggUUGGCGUUg -3'
miRNA:   3'- gGGAGGUCGAGG-----------CAG----------UGG---AGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 128376 0.66 0.910573
Target:  5'- gCCCUCC----CCGUCGCCggCGGCGg- -3'
miRNA:   3'- -GGGAGGucgaGGCAGUGGa-GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 151035 0.66 0.910573
Target:  5'- aCCUCgaggCGGCggcCCGUCAcgcgguCCUCGACGg- -3'
miRNA:   3'- gGGAG----GUCGa--GGCAGU------GGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 91016 0.66 0.916173
Target:  5'- -aCUCCAuGUUCCGcuUCAuCCUggaCGGCGUCa -3'
miRNA:   3'- ggGAGGU-CGAGGC--AGU-GGA---GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 194943 0.66 0.931682
Target:  5'- gCCgCUCC-GCUccCCGUCGCCgCGAccccgcCGUCg -3'
miRNA:   3'- -GG-GAGGuCGA--GGCAGUGGaGCU------GCAG- -5'
9055 5' -57.9 NC_002512.2 + 164174 0.66 0.910573
Target:  5'- cCCCgccCUAuCUCCGggGCCUCGACGa- -3'
miRNA:   3'- -GGGa--GGUcGAGGCagUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 166334 0.66 0.931682
Target:  5'- cCCCUCCGGagg-GUCAUCuUCGACGg- -3'
miRNA:   3'- -GGGAGGUCgaggCAGUGG-AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 147953 0.66 0.916173
Target:  5'- cCCCUCC-GC-CC-UCGCCgUCGuCGUCc -3'
miRNA:   3'- -GGGAGGuCGaGGcAGUGG-AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 157696 0.66 0.910573
Target:  5'- aCUUCC-GCgCCuUCGCCUCGGCGg- -3'
miRNA:   3'- gGGAGGuCGaGGcAGUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 167637 0.66 0.910573
Target:  5'- gCCCgucgcCCAGCU-CGUCcUCUCGuCGUCc -3'
miRNA:   3'- -GGGa----GGUCGAgGCAGuGGAGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 186118 0.66 0.926728
Target:  5'- gCCC-CgAGCUCucccuCGUCugcaauagcuuCCUCGGCGUCu -3'
miRNA:   3'- -GGGaGgUCGAG-----GCAGu----------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 210024 0.66 0.921558
Target:  5'- aCgUCCAGCcguaCCGUCgcGCCUUccgcuccgggGACGUCg -3'
miRNA:   3'- gGgAGGUCGa---GGCAG--UGGAG----------CUGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.