miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 1336 0.67 0.892501
Target:  5'- gCgUCCGGCUgCCGUCcGCCUCccguguCGUCc -3'
miRNA:   3'- gGgAGGUCGA-GGCAG-UGGAGcu----GCAG- -5'
9055 5' -57.9 NC_002512.2 + 1403 0.7 0.749898
Target:  5'- cCCCUCCGcGUcuucgguccccUCgGUCccCCUCGGCGUCu -3'
miRNA:   3'- -GGGAGGU-CG-----------AGgCAGu-GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 1890 0.75 0.457057
Target:  5'- uCCCgUCCGGCUCCGgcccUCGgcCCUCGGCGcCg -3'
miRNA:   3'- -GGG-AGGUCGAGGC----AGU--GGAGCUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 1932 0.71 0.707844
Target:  5'- cCUCUCCGGCUCCcccgcgcuccccCGCCUCGuccgccgGCGUCg -3'
miRNA:   3'- -GGGAGGUCGAGGca----------GUGGAGC-------UGCAG- -5'
9055 5' -57.9 NC_002512.2 + 2238 0.73 0.558176
Target:  5'- uUCCUCCGgacccgggcGCUCCGUCGCCU-GACcUCg -3'
miRNA:   3'- -GGGAGGU---------CGAGGCAGUGGAgCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 2883 0.69 0.785714
Target:  5'- uUCUCCAGCUCgCGcCGCCUCacccucugcuaaGACGcCg -3'
miRNA:   3'- gGGAGGUCGAG-GCaGUGGAG------------CUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 5373 0.75 0.474764
Target:  5'- gUCCUCCGGCUCUGgcgCACC-CGACa-- -3'
miRNA:   3'- -GGGAGGUCGAGGCa--GUGGaGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 6063 0.69 0.797803
Target:  5'- cCCCUCCGacGCgCCGUCgucgucccggcggucGCCgcCGACGUCc -3'
miRNA:   3'- -GGGAGGU--CGaGGCAG---------------UGGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 7232 0.69 0.819538
Target:  5'- cCCCUcggcCCGGCcggCCGUCGCggcggagCGGCGUCc -3'
miRNA:   3'- -GGGA----GGUCGa--GGCAGUGga-----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 16226 0.81 0.241463
Target:  5'- cCCCUCCGcCUCCGUCAUCgUCGuCGUCg -3'
miRNA:   3'- -GGGAGGUcGAGGCAGUGG-AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 17476 0.69 0.785714
Target:  5'- aCCUCCcGC-CCGUCGuCCUCGuCGg- -3'
miRNA:   3'- gGGAGGuCGaGGCAGU-GGAGCuGCag -5'
9055 5' -57.9 NC_002512.2 + 21506 0.71 0.683928
Target:  5'- gCCUCgCAGCgUCGggcCACCUCGuCGUCg -3'
miRNA:   3'- gGGAG-GUCGaGGCa--GUGGAGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 24903 0.81 0.215061
Target:  5'- gCCUUCCGGUccCCGUCGCCcgCGGCGUCg -3'
miRNA:   3'- -GGGAGGUCGa-GGCAGUGGa-GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 25175 0.68 0.850907
Target:  5'- gCCC-CgGGCccgCCGUCGCC--GACGUCg -3'
miRNA:   3'- -GGGaGgUCGa--GGCAGUGGagCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 29668 0.74 0.529787
Target:  5'- cUCCUCgGGCUCCGgcuCCUCGGgcuCGUCg -3'
miRNA:   3'- -GGGAGgUCGAGGCaguGGAGCU---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 34600 0.67 0.904759
Target:  5'- gCCUCCugauGGCgUCCGUCccgACUUCGAgUGUCc -3'
miRNA:   3'- gGGAGG----UCG-AGGCAG---UGGAGCU-GCAG- -5'
9055 5' -57.9 NC_002512.2 + 34672 0.66 0.912838
Target:  5'- aCCUCCGGC--CGUC-CCUCagacaccggcacccaGGCGUCg -3'
miRNA:   3'- gGGAGGUCGagGCAGuGGAG---------------CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 36224 0.7 0.731398
Target:  5'- gCCCUCCugGGUccccuUCCGUCuuaugacgACCUCGGCGg- -3'
miRNA:   3'- -GGGAGG--UCG-----AGGCAG--------UGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 36445 0.66 0.931682
Target:  5'- uCCCgccaCCGGCggccgCgGUCGCgCUCGuaguCGUCg -3'
miRNA:   3'- -GGGa---GGUCGa----GgCAGUG-GAGCu---GCAG- -5'
9055 5' -57.9 NC_002512.2 + 38199 0.68 0.841007
Target:  5'- gCCUCCAGCacggUCCgGUCGCC-CagccccgggacgcgGACGUCu -3'
miRNA:   3'- gGGAGGUCG----AGG-CAGUGGaG--------------CUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.