miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 226679 0.73 0.596645
Target:  5'- aCUCUCUgAGCgccgggCCGUCGCCcgcggCGGCGUCg -3'
miRNA:   3'- -GGGAGG-UCGa-----GGCAGUGGa----GCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 226117 0.69 0.802905
Target:  5'- -aCUCCGGgUCCGUCuCCUCGGgcUCg -3'
miRNA:   3'- ggGAGGUCgAGGCAGuGGAGCUgcAG- -5'
9055 5' -57.9 NC_002512.2 + 226033 0.68 0.835556
Target:  5'- aCgUCC-GCUCCGUCuacgacugcgACCUCGGCcUCg -3'
miRNA:   3'- gGgAGGuCGAGGCAG----------UGGAGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 225258 0.66 0.910573
Target:  5'- -gCUCCuuCUCCGcCAggagggcguCCUCGGCGUCc -3'
miRNA:   3'- ggGAGGucGAGGCaGU---------GGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 224436 0.68 0.865542
Target:  5'- cCCCUUCcGCUCUacgCGCCgacgCGugGUCu -3'
miRNA:   3'- -GGGAGGuCGAGGca-GUGGa---GCugCAG- -5'
9055 5' -57.9 NC_002512.2 + 223570 0.68 0.858317
Target:  5'- cCCCgCgGGCggCgGcCACCUCGACGUg -3'
miRNA:   3'- -GGGaGgUCGa-GgCaGUGGAGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 223228 0.71 0.69353
Target:  5'- uCCCggCCGGCUCgGUgCACUUCGAC-UCc -3'
miRNA:   3'- -GGGa-GGUCGAGgCA-GUGGAGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 220143 0.7 0.768024
Target:  5'- --gUCCGGCUCCGcCGCCcccaagGGCGUCg -3'
miRNA:   3'- gggAGGUCGAGGCaGUGGag----CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 219009 0.68 0.827627
Target:  5'- cUCCUCCAGCaCUG-CugCUgCGACGUg -3'
miRNA:   3'- -GGGAGGUCGaGGCaGugGA-GCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 218828 0.67 0.89812
Target:  5'- gCCCUCCGcggcccuGCUCUGcgacuUCGCCgaCGAgGUCg -3'
miRNA:   3'- -GGGAGGU-------CGAGGC-----AGUGGa-GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 218557 0.7 0.759012
Target:  5'- gCCUCCgccGGCgUCCGUCGCgUCGGCc-- -3'
miRNA:   3'- gGGAGG---UCG-AGGCAGUGgAGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 218036 0.68 0.827627
Target:  5'- gUCCUCC-GCgucccuccCCGUCGCCgCGuCGUCg -3'
miRNA:   3'- -GGGAGGuCGa-------GGCAGUGGaGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 215537 0.8 0.270511
Target:  5'- gCCCUCCGggagauccuGCUggCCGUCggcGCCUCGGCGUCg -3'
miRNA:   3'- -GGGAGGU---------CGA--GGCAG---UGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 215482 0.68 0.835556
Target:  5'- cUCCUCCuggcgccuGCUCUacuUCGCCUCcGugGUCg -3'
miRNA:   3'- -GGGAGGu-------CGAGGc--AGUGGAG-CugCAG- -5'
9055 5' -57.9 NC_002512.2 + 215336 0.69 0.790926
Target:  5'- uUCCUcgaccggaucgugcCCGGCUCCGUCgacuccgucgcgcGCUUCGcCGUCg -3'
miRNA:   3'- -GGGA--------------GGUCGAGGCAG-------------UGGAGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 214369 0.71 0.712587
Target:  5'- gCCUUCUGGCUCCGggACCacaUCGuCGUCu -3'
miRNA:   3'- -GGGAGGUCGAGGCagUGG---AGCuGCAG- -5'
9055 5' -57.9 NC_002512.2 + 211460 0.68 0.835556
Target:  5'- gCCUgCGGCugccccggaUCCGaCACCUCGACcUCg -3'
miRNA:   3'- gGGAgGUCG---------AGGCaGUGGAGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 210024 0.66 0.921558
Target:  5'- aCgUCCAGCcguaCCGUCgcGCCUUccgcuccgggGACGUCg -3'
miRNA:   3'- gGgAGGUCGa---GGCAG--UGGAG----------CUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 209744 0.72 0.645208
Target:  5'- aCCUUCCGGUacggacagCCGUCGCgCUCcGCGUCu -3'
miRNA:   3'- -GGGAGGUCGa-------GGCAGUG-GAGcUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 209463 0.66 0.926728
Target:  5'- aUCUUCGGCUCCGgcgaacaccggCugCUCGucgcCGUCu -3'
miRNA:   3'- gGGAGGUCGAGGCa----------GugGAGCu---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.