miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9055 5' -57.9 NC_002512.2 + 38992 0.67 0.872578
Target:  5'- uUCCUCCGGUUCgCcUCGCCccgCGACG-Cg -3'
miRNA:   3'- -GGGAGGUCGAG-GcAGUGGa--GCUGCaG- -5'
9055 5' -57.9 NC_002512.2 + 44013 0.66 0.910573
Target:  5'- aCCUgCCAGCggcCCGaggCGCCcuccUCGACGUa -3'
miRNA:   3'- gGGA-GGUCGa--GGCa--GUGG----AGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 50839 0.7 0.740691
Target:  5'- gCCCaUCCAaaucucGUUCCGgcaggUCACC-CGACGUCg -3'
miRNA:   3'- -GGG-AGGU------CGAGGC-----AGUGGaGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 57482 0.66 0.931682
Target:  5'- -gCUCCAGCcgggCgGUCAUCcCGGCGUg -3'
miRNA:   3'- ggGAGGUCGa---GgCAGUGGaGCUGCAg -5'
9055 5' -57.9 NC_002512.2 + 62150 0.68 0.827627
Target:  5'- gCCCggCAGCUCC-UCGCCccgcUCGACGa- -3'
miRNA:   3'- -GGGagGUCGAGGcAGUGG----AGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 63433 0.66 0.926728
Target:  5'- gCCCUCgAGCccggcgCCGUCGCCcccggaggaCGGCGg- -3'
miRNA:   3'- -GGGAGgUCGa-----GGCAGUGGa--------GCUGCag -5'
9055 5' -57.9 NC_002512.2 + 65139 0.66 0.921558
Target:  5'- gCgUCCAuggcggcgcGCUaCCGgu-CCUCGACGUCg -3'
miRNA:   3'- gGgAGGU---------CGA-GGCaguGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 67940 0.66 0.923652
Target:  5'- uCCCUCCGGaCggagaggggucgcgCCGguUCGCCgUGGCGUCc -3'
miRNA:   3'- -GGGAGGUC-Ga-------------GGC--AGUGGaGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 71218 0.74 0.511158
Target:  5'- gCCaugaUCuCGGCgaugaCCGUgGCCUCGACGUCg -3'
miRNA:   3'- -GGg---AG-GUCGa----GGCAgUGGAGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 72521 0.68 0.843318
Target:  5'- uCCCUgcCCGGCggcCCGg-ACCUCGGCGg- -3'
miRNA:   3'- -GGGA--GGUCGa--GGCagUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 73790 0.69 0.794375
Target:  5'- gCCUUCAGCUgCGaguCCUCGACGa- -3'
miRNA:   3'- gGGAGGUCGAgGCaguGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 74508 0.67 0.886061
Target:  5'- gCCCgCCGGCgCCGcCGCCcCGACcUCg -3'
miRNA:   3'- -GGGaGGUCGaGGCaGUGGaGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 74603 0.7 0.768024
Target:  5'- gCCCUCCgucGGCUCgaGcCGCCUCGGC-UCc -3'
miRNA:   3'- -GGGAGG---UCGAGg-CaGUGGAGCUGcAG- -5'
9055 5' -57.9 NC_002512.2 + 76459 0.69 0.785714
Target:  5'- gCCCggCCGGCcugccgccauUCCGcCACCUCGACc-- -3'
miRNA:   3'- -GGGa-GGUCG----------AGGCaGUGGAGCUGcag -5'
9055 5' -57.9 NC_002512.2 + 76765 0.66 0.926728
Target:  5'- gCCCgUCCcGC-CCGUCGCCacCGAauCGUCc -3'
miRNA:   3'- -GGG-AGGuCGaGGCAGUGGa-GCU--GCAG- -5'
9055 5' -57.9 NC_002512.2 + 78705 0.68 0.835556
Target:  5'- uUCCUUUAGCUCUaguacguuaGUCAUUUCGACGa- -3'
miRNA:   3'- -GGGAGGUCGAGG---------CAGUGGAGCUGCag -5'
9055 5' -57.9 NC_002512.2 + 80102 0.7 0.759012
Target:  5'- uCCCgUCCAGCUCguggagcauCGUCGCCUgguccaucgCGGgGUCg -3'
miRNA:   3'- -GGG-AGGUCGAG---------GCAGUGGA---------GCUgCAG- -5'
9055 5' -57.9 NC_002512.2 + 82997 0.66 0.916173
Target:  5'- gCCUCCAGCUgCGcCuggGCCUCcgGGCGg- -3'
miRNA:   3'- gGGAGGUCGAgGCaG---UGGAG--CUGCag -5'
9055 5' -57.9 NC_002512.2 + 83098 0.7 0.759012
Target:  5'- cUCCUCCGGgUCCGgCGgUcCGGCGUCg -3'
miRNA:   3'- -GGGAGGUCgAGGCaGUgGaGCUGCAG- -5'
9055 5' -57.9 NC_002512.2 + 88981 0.7 0.722028
Target:  5'- gUCUCCGGCUUCGUgGCCggggggcCGACGg- -3'
miRNA:   3'- gGGAGGUCGAGGCAgUGGa------GCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.