miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 3' -53.3 NC_002512.2 + 228055 0.66 0.990585
Target:  5'- gCCCGCGGaCGGCugCgGCGcGGGAg- -3'
miRNA:   3'- aGGGCGCUaGUCGugG-CGUuUCUUgu -5'
9060 3' -53.3 NC_002512.2 + 101438 0.66 0.990585
Target:  5'- gCCgGCGGcgCGGCGaCGCcGAGAGCGg -3'
miRNA:   3'- aGGgCGCUa-GUCGUgGCGuUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 110818 0.66 0.990585
Target:  5'- aCCgGuCGAgggaCAGCAgCGCGAucaGGAGCAg -3'
miRNA:   3'- aGGgC-GCUa---GUCGUgGCGUU---UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 127404 0.66 0.990585
Target:  5'- gCCUGCGGgacCGcCACCGCGAcGGGCGc -3'
miRNA:   3'- aGGGCGCUa--GUcGUGGCGUUuCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 58060 0.66 0.990585
Target:  5'- gUCCCGCGGUacCGGaUGCCggGCAgcAGGAGCGc -3'
miRNA:   3'- -AGGGCGCUA--GUC-GUGG--CGU--UUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 104359 0.66 0.990585
Target:  5'- -gCCGCGG-CGGCACgGCAA--GACGu -3'
miRNA:   3'- agGGCGCUaGUCGUGgCGUUucUUGU- -5'
9060 3' -53.3 NC_002512.2 + 104390 0.66 0.990585
Target:  5'- aUCCCgGUGAUCuGUuucCUGCuGAAGAACAu -3'
miRNA:   3'- -AGGG-CGCUAGuCGu--GGCG-UUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 218600 0.66 0.990585
Target:  5'- cCCCGgGGUCucGC-CCGCGgacucgAAGGACGc -3'
miRNA:   3'- aGGGCgCUAGu-CGuGGCGU------UUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 224030 0.66 0.990585
Target:  5'- gCCCGgGAcuccgaCGGgGCCGCcGGGGACGa -3'
miRNA:   3'- aGGGCgCUa-----GUCgUGGCGuUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 212452 0.66 0.990585
Target:  5'- -gCCGCGAc---CGCCGCGAGGAggGCAu -3'
miRNA:   3'- agGGCGCUagucGUGGCGUUUCU--UGU- -5'
9060 3' -53.3 NC_002512.2 + 129200 0.66 0.989305
Target:  5'- -aCCGUGcg-GGCGCUGCAGAGcAGCAc -3'
miRNA:   3'- agGGCGCuagUCGUGGCGUUUC-UUGU- -5'
9060 3' -53.3 NC_002512.2 + 106218 0.66 0.989305
Target:  5'- gUCCGCGGccauggCGGCGCgCGCGcGGGAACc -3'
miRNA:   3'- aGGGCGCUa-----GUCGUG-GCGU-UUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 131044 0.66 0.989305
Target:  5'- -gCCGCGGgggaggaCGGCGCCGCGccGGAg- -3'
miRNA:   3'- agGGCGCUa------GUCGUGGCGUuuCUUgu -5'
9060 3' -53.3 NC_002512.2 + 173568 0.66 0.989305
Target:  5'- aCUCGCGcuUCAGCugCGCc--GAGCu -3'
miRNA:   3'- aGGGCGCu-AGUCGugGCGuuuCUUGu -5'
9060 3' -53.3 NC_002512.2 + 153011 0.66 0.989305
Target:  5'- gUCCC-CGGUCGGguCgGC-GGGAGCGg -3'
miRNA:   3'- -AGGGcGCUAGUCguGgCGuUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 116163 0.66 0.989305
Target:  5'- gCCCGCaGAUCGccGC-CCGCGucGGGACc -3'
miRNA:   3'- aGGGCG-CUAGU--CGuGGCGUu-UCUUGu -5'
9060 3' -53.3 NC_002512.2 + 209886 0.66 0.989305
Target:  5'- --aCGUGGUCGGU--CGCGGGGAGCAg -3'
miRNA:   3'- aggGCGCUAGUCGugGCGUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 227442 0.66 0.989305
Target:  5'- -gCCGCGGUCAccuucGCGCUGcCGGGGGAgAg -3'
miRNA:   3'- agGGCGCUAGU-----CGUGGC-GUUUCUUgU- -5'
9060 3' -53.3 NC_002512.2 + 153036 0.66 0.989305
Target:  5'- gUCCC-CGGUCGGguCgGC-GGGAGCGg -3'
miRNA:   3'- -AGGGcGCUAGUCguGgCGuUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 227266 0.66 0.989305
Target:  5'- aCgaGCGA-CAGgACgGCGGAGAACAg -3'
miRNA:   3'- aGggCGCUaGUCgUGgCGUUUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.