miRNA display CGI


Results 41 - 60 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 3' -53.3 NC_002512.2 + 148947 0.66 0.984643
Target:  5'- aCCCGgGA-CGGCaccuACCGCcgGGAGGGCGc -3'
miRNA:   3'- aGGGCgCUaGUCG----UGGCG--UUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 118588 0.66 0.984643
Target:  5'- -gCCGCGAUCGGCGgcccucuccCCGCGgcGGccgACAu -3'
miRNA:   3'- agGGCGCUAGUCGU---------GGCGUuuCU---UGU- -5'
9060 3' -53.3 NC_002512.2 + 62231 0.66 0.984643
Target:  5'- gUCCUGCGAg-AGgACCGacgAGAGGACGa -3'
miRNA:   3'- -AGGGCGCUagUCgUGGCg--UUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 4097 0.66 0.984643
Target:  5'- gCCCGCGGccCGGcCGgCGCAGccucgGGAACAg -3'
miRNA:   3'- aGGGCGCUa-GUC-GUgGCGUU-----UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 120695 0.66 0.984643
Target:  5'- gCCCGCGggCGGUuUCGCAucGAGa- -3'
miRNA:   3'- aGGGCGCuaGUCGuGGCGUuuCUUgu -5'
9060 3' -53.3 NC_002512.2 + 142196 0.66 0.984464
Target:  5'- aUCCGgGGUCGugucggcGCGCCGUuAAGAGCc -3'
miRNA:   3'- aGGGCgCUAGU-------CGUGGCGuUUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 95985 0.66 0.984464
Target:  5'- -gCgGCGGUCggcguccGGCGCCGCGAccgccaggcGGAACGc -3'
miRNA:   3'- agGgCGCUAG-------UCGUGGCGUU---------UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 192160 0.66 0.983548
Target:  5'- aUCCCGCGGccccugcccucgcugUCcguccuGCGCCGCGgcugggGAGGACc -3'
miRNA:   3'- -AGGGCGCU---------------AGu-----CGUGGCGU------UUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 198151 0.66 0.982787
Target:  5'- cCCCGCGcgggccggGUCGGCGCCGgcCGgcGGACc -3'
miRNA:   3'- aGGGCGC--------UAGUCGUGGC--GUuuCUUGu -5'
9060 3' -53.3 NC_002512.2 + 160 0.66 0.982787
Target:  5'- gCCgGCGGaggagCGcGCGCCGgGAGGGACGg -3'
miRNA:   3'- aGGgCGCUa----GU-CGUGGCgUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 229563 0.66 0.982787
Target:  5'- gCCgGCGGaggagCGcGCGCCGgGAGGGACGg -3'
miRNA:   3'- aGGgCGCUa----GU-CGUGGCgUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 123111 0.66 0.982787
Target:  5'- aCCC-CGAcCAGuCGCCGCGggccGAGAGCc -3'
miRNA:   3'- aGGGcGCUaGUC-GUGGCGU----UUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 44415 0.66 0.982787
Target:  5'- aCCUGCGGcggCAGgACCacggcgaaggaGCAGAGGGCGg -3'
miRNA:   3'- aGGGCGCUa--GUCgUGG-----------CGUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 199022 0.66 0.982787
Target:  5'- cUCCUGCG-UCAGgaACCGCGGcgcgucGAACAg -3'
miRNA:   3'- -AGGGCGCuAGUCg-UGGCGUUu-----CUUGU- -5'
9060 3' -53.3 NC_002512.2 + 80476 0.66 0.982592
Target:  5'- -gCCGCGGUCcccucgcGGC-CCGuCGAGGAGCc -3'
miRNA:   3'- agGGCGCUAG-------UCGuGGC-GUUUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 150279 0.66 0.982592
Target:  5'- -aCCGCGAccCGGCGcugccgcCCGCGAAGAGg- -3'
miRNA:   3'- agGGCGCUa-GUCGU-------GGCGUUUCUUgu -5'
9060 3' -53.3 NC_002512.2 + 193685 0.67 0.980767
Target:  5'- cUCCCGCaGUCGGU-CC-CGGGGGACGa -3'
miRNA:   3'- -AGGGCGcUAGUCGuGGcGUUUCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 17856 0.67 0.980767
Target:  5'- cUCCCGgGcgCGGUGCuCGCGcAGGGCc -3'
miRNA:   3'- -AGGGCgCuaGUCGUG-GCGUuUCUUGu -5'
9060 3' -53.3 NC_002512.2 + 72805 0.67 0.980767
Target:  5'- gCCCGCcGUgGGCGCCgGCGAccccggaccccGGGACGc -3'
miRNA:   3'- aGGGCGcUAgUCGUGG-CGUU-----------UCUUGU- -5'
9060 3' -53.3 NC_002512.2 + 120180 0.67 0.980767
Target:  5'- gUCCGUGAUCAGCACgGCc------- -3'
miRNA:   3'- aGGGCGCUAGUCGUGgCGuuucuugu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.