miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 60809 0.66 0.806946
Target:  5'- aCGCGgg---CCgCGACGCCGccGCCGCGg -3'
miRNA:   3'- -GUGCaagcaGG-GCUGCGGC--CGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 196429 0.66 0.815066
Target:  5'- gAUGUUCGUCCC-ACGaCCGGagauCGCa- -3'
miRNA:   3'- gUGCAAGCAGGGcUGC-GGCCg---GCGcg -5'
9060 5' -60.9 NC_002512.2 + 105047 0.66 0.806946
Target:  5'- uCGCGggccUCG-CUCGGCGaCGGCgGCGUg -3'
miRNA:   3'- -GUGCa---AGCaGGGCUGCgGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 17047 0.66 0.81426
Target:  5'- gACGgaCGgcgCCCG-CGCCcaaccccGGCgGCGCg -3'
miRNA:   3'- gUGCaaGCa--GGGCuGCGG-------CCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 73699 0.66 0.806946
Target:  5'- gACGa-CGUCCaUGACcaugaGCUGGUCGCGCu -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-----CGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 49503 0.66 0.81426
Target:  5'- aGCgGUUCGUCCCcccgcagagcaucGGCGCC--CUGCGCg -3'
miRNA:   3'- gUG-CAAGCAGGG-------------CUGCGGccGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 21286 0.66 0.815066
Target:  5'- gCACGgaaccucgaccUCGUCCCGGa-CCcGCUGCGCg -3'
miRNA:   3'- -GUGCa----------AGCAGGGCUgcGGcCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196735 0.66 0.806946
Target:  5'- aCAUGUUCGUUCCGAguCCGuGUCagGCGCc -3'
miRNA:   3'- -GUGCAAGCAGGGCUgcGGC-CGG--CGCG- -5'
9060 5' -60.9 NC_002512.2 + 35258 0.66 0.815066
Target:  5'- gACGggCagGUCCCccgcGGCGaCGGCCGCGg -3'
miRNA:   3'- gUGCaaG--CAGGG----CUGCgGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 81781 0.66 0.806946
Target:  5'- cCGCc-UCGUCUuCGGCGCCGccGCCGcCGCc -3'
miRNA:   3'- -GUGcaAGCAGG-GCUGCGGC--CGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 58027 0.66 0.823043
Target:  5'- gGCGUUcCGcCCCcuC-CCGGCCGCGg -3'
miRNA:   3'- gUGCAA-GCaGGGcuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 82834 0.66 0.815066
Target:  5'- aACGU---UCCCGcC-CCGGuCCGCGCg -3'
miRNA:   3'- gUGCAagcAGGGCuGcGGCC-GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 44667 0.66 0.806946
Target:  5'- aCGCGU---UCCaCGACGCgGGCCacCGCg -3'
miRNA:   3'- -GUGCAagcAGG-GCUGCGgCCGGc-GCG- -5'
9060 5' -60.9 NC_002512.2 + 84317 0.66 0.81426
Target:  5'- uGCGgcgCGUCgCG-CGCCGcagcgucGCCGCGUc -3'
miRNA:   3'- gUGCaa-GCAGgGCuGCGGC-------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 97197 0.66 0.815066
Target:  5'- gACGccCGUCUgCGGCgGCgGGCCGgGCg -3'
miRNA:   3'- gUGCaaGCAGG-GCUG-CGgCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 84677 0.66 0.806946
Target:  5'- aCugGUccUCGUCCCGcaGC-CCGGggucgaacuCCGUGCg -3'
miRNA:   3'- -GugCA--AGCAGGGC--UGcGGCC---------GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 135008 0.66 0.823043
Target:  5'- -cCGUUCGUCCUGGaggauucggGCCGGCgGaCGg -3'
miRNA:   3'- guGCAAGCAGGGCUg--------CGGCCGgC-GCg -5'
9060 5' -60.9 NC_002512.2 + 78797 0.66 0.823043
Target:  5'- aCACGUgcaCGUCuCCGGCGC-GGaCCGagacCGCa -3'
miRNA:   3'- -GUGCAa--GCAG-GGCUGCGgCC-GGC----GCG- -5'
9060 5' -60.9 NC_002512.2 + 104824 0.66 0.806946
Target:  5'- gGCGUcgaaCGUCCCGuC-CCGGCUGgaGCg -3'
miRNA:   3'- gUGCAa---GCAGGGCuGcGGCCGGCg-CG- -5'
9060 5' -60.9 NC_002512.2 + 147926 0.66 0.815066
Target:  5'- aGCGUuuUCGUCuUCGuCGgCGGCCGC-Cg -3'
miRNA:   3'- gUGCA--AGCAG-GGCuGCgGCCGGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.