miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 141271 1.11 0.001515
Target:  5'- cCACGUUCGUCCCGACGCCGGCCGCGCg -3'
miRNA:   3'- -GUGCAAGCAGGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 137249 0.8 0.180008
Target:  5'- gCGCGg--GUCCCGGCGCCGGCgGcCGCc -3'
miRNA:   3'- -GUGCaagCAGGGCUGCGGCCGgC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 90387 0.8 0.184249
Target:  5'- gCACGcUCGaggucuUgCCGGCGCCGGCCGUGCc -3'
miRNA:   3'- -GUGCaAGC------AgGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 143535 0.8 0.188577
Target:  5'- gGCGgccUCGUCgCCGuCGgCGGCCGCGCg -3'
miRNA:   3'- gUGCa--AGCAG-GGCuGCgGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 122101 0.79 0.202103
Target:  5'- aCGCGaggUCGgCgCUGACGUCGGCCGCGCu -3'
miRNA:   3'- -GUGCa--AGCaG-GGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 2202 0.79 0.216463
Target:  5'- -cCGUcgUCGUCUCGGuCGCCGGCgGCGCc -3'
miRNA:   3'- guGCA--AGCAGGGCU-GCGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 191052 0.78 0.226004
Target:  5'- gCACGUggaccggUCGcgCCUGGCGCUGGCUGUGCg -3'
miRNA:   3'- -GUGCA-------AGCa-GGGCUGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 92597 0.78 0.226516
Target:  5'- gGCGgcgGUCCCGAgGCCGGUCGCGa -3'
miRNA:   3'- gUGCaagCAGGGCUgCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 128266 0.78 0.247806
Target:  5'- gGCGacucgCGUCCCGGCGCCGGgCCGaCGg -3'
miRNA:   3'- gUGCaa---GCAGGGCUGCGGCC-GGC-GCg -5'
9060 5' -60.9 NC_002512.2 + 50445 0.78 0.247806
Target:  5'- -cCGgaUGUCCagaaGACGCCGGCCGCGa -3'
miRNA:   3'- guGCaaGCAGGg---CUGCGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 29890 0.77 0.252819
Target:  5'- gCACGUgggccgcUCGUCCC--CGCCGGgCGCGCg -3'
miRNA:   3'- -GUGCA-------AGCAGGGcuGCGGCCgGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 220816 0.77 0.253381
Target:  5'- -uCGUg-GUCCCGcCGCUGGCCGUGCu -3'
miRNA:   3'- guGCAagCAGGGCuGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 46443 0.77 0.270726
Target:  5'- aACGg-CGUCCUGAcCGUgGGCCGCGCu -3'
miRNA:   3'- gUGCaaGCAGGGCU-GCGgCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 90634 0.77 0.276716
Target:  5'- gGCGgcgCGaCCCGGCGCCgcGGCCGCGg -3'
miRNA:   3'- gUGCaa-GCaGGGCUGCGG--CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 5079 0.77 0.282812
Target:  5'- gGCGUuggucgUCGUCgCCGGCGUCGGCgCGgGCg -3'
miRNA:   3'- gUGCA------AGCAG-GGCUGCGGCCG-GCgCG- -5'
9060 5' -60.9 NC_002512.2 + 130749 0.77 0.289013
Target:  5'- -cCGUUCc-CCCGACGauCCGGCCGUGCg -3'
miRNA:   3'- guGCAAGcaGGGCUGC--GGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 134789 0.76 0.295321
Target:  5'- cCGCGUcccCGggCCCGACGCCGGUCuCGCu -3'
miRNA:   3'- -GUGCAa--GCa-GGGCUGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 155876 0.76 0.314885
Target:  5'- aCGCuGUUCGUcCCCGACGgCGGgCGCGg -3'
miRNA:   3'- -GUG-CAAGCA-GGGCUGCgGCCgGCGCg -5'
9060 5' -60.9 NC_002512.2 + 68176 0.76 0.32162
Target:  5'- -----aCGaUCCCGuCGCCGGCCGCGUc -3'
miRNA:   3'- gugcaaGC-AGGGCuGCGGCCGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 57232 0.75 0.349632
Target:  5'- aCGCGggCGUCCC--CGCaGGCCGCGUa -3'
miRNA:   3'- -GUGCaaGCAGGGcuGCGgCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.