miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 51339 0.67 0.961035
Target:  5'- aCCggaUCGUGACGGGC-UCGAUGCCg- -3'
miRNA:   3'- cGGa--GGUACUGCUUGuAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 56604 0.71 0.863027
Target:  5'- cCCUCCAgcgGACGGugaGCGUCGgaACGCCg- -3'
miRNA:   3'- cGGAGGUa--CUGCU---UGUAGC--UGCGGga -5'
9069 5' -54.3 NC_002512.2 + 58345 0.69 0.931076
Target:  5'- aGCacgCCGUG-CGAACAgggcuugaugcgcUCGACGUCCUc -3'
miRNA:   3'- -CGga-GGUACuGCUUGU-------------AGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 62048 0.72 0.815182
Target:  5'- gGCCUCCcgGACGuGCG-CGGgGUCCUc -3'
miRNA:   3'- -CGGAGGuaCUGCuUGUaGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 62469 0.69 0.936458
Target:  5'- uGCCgCCGc-ACGAG-AUCGACGCCCUu -3'
miRNA:   3'- -CGGaGGUacUGCUUgUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 63054 0.69 0.926466
Target:  5'- -gCUCCcUGACGAaacgguagcGCGUCGcuuCGCCCa -3'
miRNA:   3'- cgGAGGuACUGCU---------UGUAGCu--GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 65138 0.67 0.973175
Target:  5'- gGCgUCCAUGGCGGcGCGcuaccgguccUCGACGUCg- -3'
miRNA:   3'- -CGgAGGUACUGCU-UGU----------AGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 70842 0.66 0.984876
Target:  5'- cGCC-CCggGACGAGaugccgcggagaaguCGUCGGucCGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCUU---------------GUAGCU--GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 73789 0.73 0.748502
Target:  5'- gGCCUUCAgcugcgaguccucGACGAACugcCGGCGCCCg -3'
miRNA:   3'- -CGGAGGUa------------CUGCUUGua-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 74008 0.7 0.903741
Target:  5'- cGCCcgCCGUcgggGACGAACAgCGugGCCg- -3'
miRNA:   3'- -CGGa-GGUA----CUGCUUGUaGCugCGGga -5'
9069 5' -54.3 NC_002512.2 + 74622 0.69 0.931576
Target:  5'- cGCCUCgGcucccGCGAGcCGUCGACGCCg- -3'
miRNA:   3'- -CGGAGgUac---UGCUU-GUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 75233 0.66 0.984173
Target:  5'- cGCCgucgCgGUGACGAGCG-CGgccGCGUCCc -3'
miRNA:   3'- -CGGa---GgUACUGCUUGUaGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 75419 0.69 0.914989
Target:  5'- uGCCUCCucgagGGCgGGACGUCcggaucggggcggGACGUCCUg -3'
miRNA:   3'- -CGGAGGua---CUG-CUUGUAG-------------CUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 75520 0.71 0.839917
Target:  5'- cCCUCgAcguUGACGGGCAcccUCGACGCCg- -3'
miRNA:   3'- cGGAGgU---ACUGCUUGU---AGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 77865 0.72 0.831844
Target:  5'- cCCUCCgGUGACGAGCAcauaaucgucaUCGGacauuCGCCCg -3'
miRNA:   3'- cGGAGG-UACUGCUUGU-----------AGCU-----GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 80103 0.71 0.863027
Target:  5'- cCCgUCCAgcucGugGAGCAUCGuCGCCUg -3'
miRNA:   3'- cGG-AGGUa---CugCUUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 80572 0.67 0.970437
Target:  5'- cCCUCCGgcGGCGAGCccgcgcggcgGUCGAcgaucuCGCCCUc -3'
miRNA:   3'- cGGAGGUa-CUGCUUG----------UAGCU------GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 81355 0.66 0.981917
Target:  5'- cGCCUCCcucgcggccggGGCGGGCggCGGcCGCCUc -3'
miRNA:   3'- -CGGAGGua---------CUGCUUGuaGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 81805 0.66 0.980284
Target:  5'- cGCCgCCGgggGACGGACGaccgCGGCGCguCCg -3'
miRNA:   3'- -CGGaGGUa--CUGCUUGUa---GCUGCG--GGa -5'
9069 5' -54.3 NC_002512.2 + 83014 0.66 0.984173
Target:  5'- gGCCUCCG-GGCGGua---GugGCCCc -3'
miRNA:   3'- -CGGAGGUaCUGCUuguagCugCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.