miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 20677 0.66 0.980284
Target:  5'- ---aCCGUGACGGGCcgCaGGCGCCgCUc -3'
miRNA:   3'- cggaGGUACUGCUUGuaG-CUGCGG-GA- -5'
9069 5' -54.3 NC_002512.2 + 23010 0.69 0.926466
Target:  5'- aCCUacCCGUcGGCGAGC-UCGGCGCCg- -3'
miRNA:   3'- cGGA--GGUA-CUGCUUGuAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 25061 0.7 0.877447
Target:  5'- uCCUCCcgGACgGAGCcgCcGCGCCCc -3'
miRNA:   3'- cGGAGGuaCUG-CUUGuaGcUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 29733 0.67 0.975724
Target:  5'- cGCCcuaCCGUGGCGGcgcGCGagGGgGCCCg -3'
miRNA:   3'- -CGGa--GGUACUGCU---UGUagCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 30451 0.74 0.713913
Target:  5'- gGCCUgcCCAUGGCGccguACAuguUCGAgGCCCUg -3'
miRNA:   3'- -CGGA--GGUACUGCu---UGU---AGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 32982 0.7 0.897496
Target:  5'- gGCCUCCAUGAgGcuGGCcaUGACGCCg- -3'
miRNA:   3'- -CGGAGGUACUgC--UUGuaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 34063 0.69 0.921127
Target:  5'- uGCC-CCAcGACGGcgGCGUCGACGaugucCCCg -3'
miRNA:   3'- -CGGaGGUaCUGCU--UGUAGCUGC-----GGGa -5'
9069 5' -54.3 NC_002512.2 + 35366 0.69 0.915558
Target:  5'- gGCCUCCAUGAUGAcCcgGUUGAUGCg-- -3'
miRNA:   3'- -CGGAGGUACUGCUuG--UAGCUGCGgga -5'
9069 5' -54.3 NC_002512.2 + 38930 0.67 0.964373
Target:  5'- gGCCgCCGcGGCGGGCGcccgCGuGCGCCCg -3'
miRNA:   3'- -CGGaGGUaCUGCUUGUa---GC-UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 40212 0.66 0.978092
Target:  5'- cUCUCCGgu-CGGGCGUUGACGCUg- -3'
miRNA:   3'- cGGAGGUacuGCUUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 40261 0.66 0.978092
Target:  5'- aGCCgaCCGcGACGAucGCGUgCGGcCGCCCg -3'
miRNA:   3'- -CGGa-GGUaCUGCU--UGUA-GCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 40862 0.68 0.945539
Target:  5'- cGUgUUCAUGGuuGACAUCGugGUCCUa -3'
miRNA:   3'- -CGgAGGUACUgcUUGUAGCugCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 43359 0.66 0.978092
Target:  5'- gGCC-CCGUGcACGcaGAgGUCGACGCUg- -3'
miRNA:   3'- -CGGaGGUAC-UGC--UUgUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 43666 0.77 0.525772
Target:  5'- cCCUCgGUGGCGGccgcggcguCAUCGGCGCCCg -3'
miRNA:   3'- cGGAGgUACUGCUu--------GUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 46423 0.68 0.957487
Target:  5'- gGCCUUgGUGGCG-GCGcCGACGUUCUc -3'
miRNA:   3'- -CGGAGgUACUGCuUGUaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 47174 0.7 0.901891
Target:  5'- uCCUCUcgGACcGACAUCuaauagacgaggaaGACGCCCg -3'
miRNA:   3'- cGGAGGuaCUGcUUGUAG--------------CUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 49513 0.71 0.855515
Target:  5'- cCCcCCGca--GAGCAUCGGCGCCCUg -3'
miRNA:   3'- cGGaGGUacugCUUGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 50290 0.73 0.780013
Target:  5'- ---aCCggGAccCGGACAUCGACGCCCa -3'
miRNA:   3'- cggaGGuaCU--GCUUGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 50754 0.69 0.921127
Target:  5'- gGCCUCUccGGCGAGCuggaucacgcgAUCGACGCg-- -3'
miRNA:   3'- -CGGAGGuaCUGCUUG-----------UAGCUGCGgga -5'
9069 5' -54.3 NC_002512.2 + 50980 0.7 0.903741
Target:  5'- cGCCUCgGUGACGGACGcggagcUgGACGCg-- -3'
miRNA:   3'- -CGGAGgUACUGCUUGU------AgCUGCGgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.