miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 9151 0.73 0.770882
Target:  5'- aGCgCUCCAUGAggUGGAgGUCGAaGCCCa -3'
miRNA:   3'- -CG-GAGGUACU--GCUUgUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 50290 0.73 0.780013
Target:  5'- ---aCCggGAccCGGACAUCGACGCCCa -3'
miRNA:   3'- cggaGGuaCU--GCUUGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 101056 0.72 0.789016
Target:  5'- aCCUCCccGGCGAacccgGCGUCGAgggccCGCCCg -3'
miRNA:   3'- cGGAGGuaCUGCU-----UGUAGCU-----GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 215506 0.72 0.797884
Target:  5'- cGCCUCCGUGGuCGGucccaACcUCGAuccCGCCCUc -3'
miRNA:   3'- -CGGAGGUACU-GCU-----UGuAGCU---GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 62048 0.72 0.815182
Target:  5'- gGCCUCCcgGACGuGCG-CGGgGUCCUc -3'
miRNA:   3'- -CGGAGGuaCUGCuUGUaGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 218216 0.72 0.815182
Target:  5'- cGCCUCgGgccgcGGCGGGCcgCGGCGCCg- -3'
miRNA:   3'- -CGGAGgUa----CUGCUUGuaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 9718 0.72 0.831844
Target:  5'- aCCUCCucccGACgcaGAGCA-CGACGCCCUu -3'
miRNA:   3'- cGGAGGua--CUG---CUUGUaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 77865 0.72 0.831844
Target:  5'- cCCUCCgGUGACGAGCAcauaaucgucaUCGGacauuCGCCCg -3'
miRNA:   3'- cGGAGG-UACUGCUUGU-----------AGCU-----GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 200192 0.72 0.831844
Target:  5'- uCCUCCGaGACGGACGagcgCGACgaGCCCg -3'
miRNA:   3'- cGGAGGUaCUGCUUGUa---GCUG--CGGGa -5'
9069 5' -54.3 NC_002512.2 + 107463 0.71 0.839118
Target:  5'- cGCgUCCGUGGCGAuguucaucucgucGCcgCGACcgGCCCg -3'
miRNA:   3'- -CGgAGGUACUGCU-------------UGuaGCUG--CGGGa -5'
9069 5' -54.3 NC_002512.2 + 145608 0.71 0.839917
Target:  5'- aCCUCCA-GGCGGGCGUuCGGCccgcuGCCCg -3'
miRNA:   3'- cGGAGGUaCUGCUUGUA-GCUG-----CGGGa -5'
9069 5' -54.3 NC_002512.2 + 127533 0.71 0.839917
Target:  5'- aCCUCCG-GACGAc---CGACGCCCg -3'
miRNA:   3'- cGGAGGUaCUGCUuguaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 75520 0.71 0.839917
Target:  5'- cCCUCgAcguUGACGGGCAcccUCGACGCCg- -3'
miRNA:   3'- cGGAGgU---ACUGCUUGU---AGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 227741 0.71 0.839917
Target:  5'- aCCgCCGUGACGGgggagGCGacgaccgaacgcUCGACGCCCg -3'
miRNA:   3'- cGGaGGUACUGCU-----UGU------------AGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 126516 0.71 0.850915
Target:  5'- aGCCUCUGgucgGACGAcccgACcgcggccccggacucGUCGACGCCCc -3'
miRNA:   3'- -CGGAGGUa---CUGCU----UG---------------UAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 180428 0.71 0.855515
Target:  5'- uCCUCgGUGACGGcGCcccgggCGGCGCCCg -3'
miRNA:   3'- cGGAGgUACUGCU-UGua----GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 49513 0.71 0.855515
Target:  5'- cCCcCCGca--GAGCAUCGGCGCCCUg -3'
miRNA:   3'- cGGaGGUacugCUUGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 219684 0.71 0.855515
Target:  5'- cGCCgCCcgagGACGAggaggaGCGUCGGCGCUCg -3'
miRNA:   3'- -CGGaGGua--CUGCU------UGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 114178 0.71 0.863027
Target:  5'- uCCUCgGUGGCGccGGCGUCGG-GCCCg -3'
miRNA:   3'- cGGAGgUACUGC--UUGUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 98665 0.71 0.863027
Target:  5'- gGCCUCCGaccGCG-ACGUCGAgCGCCUg -3'
miRNA:   3'- -CGGAGGUac-UGCuUGUAGCU-GCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.