miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 196984 0.66 0.982309
Target:  5'- cGUgUCCGacaaccUGGCGGGCGUCGACaaCCa -3'
miRNA:   3'- -CGgAGGU------ACUGCUUGUAGCUGcgGGa -5'
9069 5' -54.3 NC_002512.2 + 106729 0.66 0.982309
Target:  5'- gGCCUCgGcGGCGAuCG-CGGCGCCg- -3'
miRNA:   3'- -CGGAGgUaCUGCUuGUaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 137171 0.66 0.982114
Target:  5'- cGCCcCCcgGACGuccguacGGCGUCGucggucCGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGC-------UUGUAGCu-----GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 81355 0.66 0.981917
Target:  5'- cGCCUCCcucgcggccggGGCGGGCggCGGcCGCCUc -3'
miRNA:   3'- -CGGAGGua---------CUGCUUGuaGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 20677 0.66 0.980284
Target:  5'- ---aCCGUGACGGGCcgCaGGCGCCgCUc -3'
miRNA:   3'- cggaGGUACUGCUUGuaG-CUGCGG-GA- -5'
9069 5' -54.3 NC_002512.2 + 81805 0.66 0.980284
Target:  5'- cGCCgCCGgggGACGGACGaccgCGGCGCguCCg -3'
miRNA:   3'- -CGGaGGUa--CUGCUUGUa---GCUGCG--GGa -5'
9069 5' -54.3 NC_002512.2 + 134453 0.66 0.980284
Target:  5'- gGCCUUCAacGACGAccagugucuGCuccuccugcgCGACGCCCUc -3'
miRNA:   3'- -CGGAGGUa-CUGCU---------UGua--------GCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 17502 0.66 0.980284
Target:  5'- cGCCUCCu---CGAucucgACGUCGGCGUCg- -3'
miRNA:   3'- -CGGAGGuacuGCU-----UGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 177596 0.66 0.980284
Target:  5'- cGUCUCC--GGCGAAUcgaucUCGGCGCUCUu -3'
miRNA:   3'- -CGGAGGuaCUGCUUGu----AGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 15708 0.66 0.980073
Target:  5'- uCCUCCGcgacgaUGACGGGC-UCGACGuagggguCCCg -3'
miRNA:   3'- cGGAGGU------ACUGCUUGuAGCUGC-------GGGa -5'
9069 5' -54.3 NC_002512.2 + 11646 0.66 0.978092
Target:  5'- cGCCgaCCcgGACauAUAUCGGCGCCg- -3'
miRNA:   3'- -CGGa-GGuaCUGcuUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 40212 0.66 0.978092
Target:  5'- cUCUCCGgu-CGGGCGUUGACGCUg- -3'
miRNA:   3'- cGGAGGUacuGCUUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 176675 0.66 0.978092
Target:  5'- cGCCUCCuggGACuGGCG-CGuCGCCUUg -3'
miRNA:   3'- -CGGAGGua-CUGcUUGUaGCuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 199613 0.66 0.978092
Target:  5'- uCCUCCAUGGCGccGGCuccgCG-CGUCCg -3'
miRNA:   3'- cGGAGGUACUGC--UUGua--GCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 43359 0.66 0.978092
Target:  5'- gGCC-CCGUGcACGcaGAgGUCGACGCUg- -3'
miRNA:   3'- -CGGaGGUAC-UGC--UUgUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 40261 0.66 0.978092
Target:  5'- aGCCgaCCGcGACGAucGCGUgCGGcCGCCCg -3'
miRNA:   3'- -CGGa-GGUaCUGCU--UGUA-GCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 116766 0.66 0.978092
Target:  5'- cGUCUCCGaggagaggcacGACGucAGCGUCGcCGCCCg -3'
miRNA:   3'- -CGGAGGUa----------CUGC--UUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 103452 0.66 0.9774
Target:  5'- cGCCgucgCCGgccgGGCGGgaggaggagaggcgGCGUCGacgGCGCCCg -3'
miRNA:   3'- -CGGa---GGUa---CUGCU--------------UGUAGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 107067 0.67 0.976693
Target:  5'- gGCCUCCAUcucguucucgggggcGGuCGggUcgGUCGGCGgCCCg -3'
miRNA:   3'- -CGGAGGUA---------------CU-GCuuG--UAGCUGC-GGGa -5'
9069 5' -54.3 NC_002512.2 + 29733 0.67 0.975724
Target:  5'- cGCCcuaCCGUGGCGGcgcGCGagGGgGCCCg -3'
miRNA:   3'- -CGGa--GGUACUGCU---UGUagCUgCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.