miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 224965 0.67 0.975724
Target:  5'- cGCCgucuacCCGcugGGCGGcgGCggCGGCGCCCUc -3'
miRNA:   3'- -CGGa-----GGUa--CUGCU--UGuaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 198378 0.67 0.975724
Target:  5'- gGCCUCCGUGAUcaggcucuGGAcCAUCcuCGUCCUg -3'
miRNA:   3'- -CGGAGGUACUG--------CUU-GUAGcuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 126404 0.67 0.975724
Target:  5'- gGCC-CCG-GGCGc-CGUCGACGCCg- -3'
miRNA:   3'- -CGGaGGUaCUGCuuGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 155595 0.67 0.975724
Target:  5'- uCCUCCGUcgagGACcacggGGACGUgCGGCGCCUg -3'
miRNA:   3'- cGGAGGUA----CUG-----CUUGUA-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 29733 0.67 0.975724
Target:  5'- cGCCcuaCCGUGGCGGcgcGCGagGGgGCCCg -3'
miRNA:   3'- -CGGa--GGUACUGCU---UGUagCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 103199 0.67 0.974217
Target:  5'- uGCCcggcgagcggggguaUCCGaGGCGGcucGCGUCGcCGCCCg -3'
miRNA:   3'- -CGG---------------AGGUaCUGCU---UGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 145998 0.67 0.973175
Target:  5'- uCUUCCccGACGAcgcgaucgACcgCGACGCCUa -3'
miRNA:   3'- cGGAGGuaCUGCU--------UGuaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 162724 0.67 0.973175
Target:  5'- cGUCUCCAccaaaGAUGcguauCAUCGACGCCg- -3'
miRNA:   3'- -CGGAGGUa----CUGCuu---GUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 206157 0.67 0.973175
Target:  5'- gGUCauggCCGUGugGAACcgCGucuCGUCCUg -3'
miRNA:   3'- -CGGa---GGUACugCUUGuaGCu--GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 132489 0.67 0.973175
Target:  5'- gGCCUCC---GCGu-CGUCG-CGCCCg -3'
miRNA:   3'- -CGGAGGuacUGCuuGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 7500 0.67 0.973175
Target:  5'- gGCgCUCCAUGAgGAGCca-GA-GCCCg -3'
miRNA:   3'- -CG-GAGGUACUgCUUGuagCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 65138 0.67 0.973175
Target:  5'- gGCgUCCAUGGCGGcGCGcuaccgguccUCGACGUCg- -3'
miRNA:   3'- -CGgAGGUACUGCU-UGU----------AGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 4600 0.67 0.973175
Target:  5'- cGCCgcgggCCGcgaGACGGACGccgagGACGCCCUc -3'
miRNA:   3'- -CGGa----GGUa--CUGCUUGUag---CUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 129544 0.67 0.970437
Target:  5'- cGUCUCCcuauUGGGCGUCGACgagGCCCg -3'
miRNA:   3'- -CGGAGGuacuGCUUGUAGCUG---CGGGa -5'
9069 5' -54.3 NC_002512.2 + 16232 0.67 0.970437
Target:  5'- cGCCUCCGUcauCGucguCGUCGccguCGCCCg -3'
miRNA:   3'- -CGGAGGUAcu-GCuu--GUAGCu---GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 157998 0.67 0.970437
Target:  5'- gGCgaCCggGA-GGAguUCGACGCCCUg -3'
miRNA:   3'- -CGgaGGuaCUgCUUguAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 127619 0.67 0.970437
Target:  5'- cGCCgagCCGaGAUGGA---CGACGCCCg -3'
miRNA:   3'- -CGGa--GGUaCUGCUUguaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 80572 0.67 0.970437
Target:  5'- cCCUCCGgcGGCGAGCccgcgcggcgGUCGAcgaucuCGCCCUc -3'
miRNA:   3'- cGGAGGUa-CUGCUUG----------UAGCU------GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 128047 0.67 0.969578
Target:  5'- uGCCUC--UGGCGGAgAUCcggaggaucgucgcGGCGCCCa -3'
miRNA:   3'- -CGGAGguACUGCUUgUAG--------------CUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 10584 0.67 0.969578
Target:  5'- cCCguggCCGcgGACGAcgaagcgggccacgGCGUCGGCGUCCg -3'
miRNA:   3'- cGGa---GGUa-CUGCU--------------UGUAGCUGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.