miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 137154 1.1 0.005848
Target:  5'- gGCCUCCAUGACGAACAUCGACGCCCUg -3'
miRNA:   3'- -CGGAGGUACUGCUUGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 100330 0.83 0.268167
Target:  5'- gGCCUCCcgGGCcu-CGUCGACGCCCa -3'
miRNA:   3'- -CGGAGGuaCUGcuuGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 102331 0.78 0.513308
Target:  5'- gGCCUCCcgGACGAcgagccggguccggGCGUCGGuCGUCCg -3'
miRNA:   3'- -CGGAGGuaCUGCU--------------UGUAGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 43666 0.77 0.525772
Target:  5'- cCCUCgGUGGCGGccgcggcguCAUCGGCGCCCg -3'
miRNA:   3'- cGGAGgUACUGCUu--------GUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 116842 0.77 0.535436
Target:  5'- uGCCggCCGUGACGAACAaccacgcgugCGGCGCCUc -3'
miRNA:   3'- -CGGa-GGUACUGCUUGUa---------GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 125053 0.77 0.545162
Target:  5'- cGCCgcUCCAgccggGACgGGACGuUCGACGCCCUg -3'
miRNA:   3'- -CGG--AGGUa----CUG-CUUGU-AGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 219393 0.76 0.574655
Target:  5'- uGCCUCCGcUGGuCGGcccGCcgCGACGCCCa -3'
miRNA:   3'- -CGGAGGU-ACU-GCU---UGuaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 6191 0.75 0.644532
Target:  5'- cGCCggCCAgGACGAugccguUGUCGGCGCCCUu -3'
miRNA:   3'- -CGGa-GGUaCUGCUu-----GUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 183445 0.75 0.644532
Target:  5'- cGUCUCgAUGGCGGucgagaACGUCGGCGCCg- -3'
miRNA:   3'- -CGGAGgUACUGCU------UGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 112909 0.75 0.644532
Target:  5'- gGCCcgCCcgGACgGGGCGUCGGCGgCCCg -3'
miRNA:   3'- -CGGa-GGuaCUG-CUUGUAGCUGC-GGGa -5'
9069 5' -54.3 NC_002512.2 + 136862 0.75 0.664522
Target:  5'- cGCCUCCGUGugGAACcacaGcUGCCCg -3'
miRNA:   3'- -CGGAGGUACugCUUGuag-CuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 112053 0.74 0.684411
Target:  5'- gGCCUCCGUGuccaGGACGUCGGucCGCCg- -3'
miRNA:   3'- -CGGAGGUACug--CUUGUAGCU--GCGGga -5'
9069 5' -54.3 NC_002512.2 + 30451 0.74 0.713913
Target:  5'- gGCCUgcCCAUGGCGccguACAuguUCGAgGCCCUg -3'
miRNA:   3'- -CGGA--GGUACUGCu---UGU---AGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 94885 0.73 0.742815
Target:  5'- uCCUCCAgGACGAACGgguaGGCGUCCc -3'
miRNA:   3'- cGGAGGUaCUGCUUGUag--CUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 73789 0.73 0.748502
Target:  5'- gGCCUUCAgcugcgaguccucGACGAACugcCGGCGCCCg -3'
miRNA:   3'- -CGGAGGUa------------CUGCUUGua-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 137313 0.73 0.752275
Target:  5'- cCCUCCcgGcCGcGGCGUCGGCGCCUc -3'
miRNA:   3'- cGGAGGuaCuGC-UUGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 140444 0.73 0.752275
Target:  5'- -aCUCCAUGGgccCGGACGUgaccccgcCGACGCCCg -3'
miRNA:   3'- cgGAGGUACU---GCUUGUA--------GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 83687 0.73 0.752275
Target:  5'- aGCCUCU-UGACGGuCGUCGA-GCCCa -3'
miRNA:   3'- -CGGAGGuACUGCUuGUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 13414 0.73 0.752275
Target:  5'- cGCCUCCcUGugGGACGcCGGCuaCCUg -3'
miRNA:   3'- -CGGAGGuACugCUUGUaGCUGcgGGA- -5'
9069 5' -54.3 NC_002512.2 + 197122 0.73 0.752275
Target:  5'- cGCCUUCGaGAU---CAUCGGCGCCCUg -3'
miRNA:   3'- -CGGAGGUaCUGcuuGUAGCUGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.