miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 119015 0.71 0.863027
Target:  5'- cGCCUCCuccuggugGACGGGCcggccGUCGugGgCCUg -3'
miRNA:   3'- -CGGAGGua------CUGCUUG-----UAGCugCgGGA- -5'
9069 5' -54.3 NC_002512.2 + 62048 0.72 0.815182
Target:  5'- gGCCUCCcgGACGuGCG-CGGgGUCCUc -3'
miRNA:   3'- -CGGAGGuaCUGCuUGUaGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 9718 0.72 0.831844
Target:  5'- aCCUCCucccGACgcaGAGCA-CGACGCCCUu -3'
miRNA:   3'- cGGAGGua--CUG---CUUGUaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 107463 0.71 0.839118
Target:  5'- cGCgUCCGUGGCGAuguucaucucgucGCcgCGACcgGCCCg -3'
miRNA:   3'- -CGgAGGUACUGCU-------------UGuaGCUG--CGGGa -5'
9069 5' -54.3 NC_002512.2 + 127533 0.71 0.839917
Target:  5'- aCCUCCG-GACGAc---CGACGCCCg -3'
miRNA:   3'- cGGAGGUaCUGCUuguaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 49513 0.71 0.855515
Target:  5'- cCCcCCGca--GAGCAUCGGCGCCCUg -3'
miRNA:   3'- cGGaGGUacugCUUGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 80103 0.71 0.863027
Target:  5'- cCCgUCCAgcucGugGAGCAUCGuCGCCUg -3'
miRNA:   3'- cGG-AGGUa---CugCUUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 56604 0.71 0.863027
Target:  5'- cCCUCCAgcgGACGGugaGCGUCGgaACGCCg- -3'
miRNA:   3'- cGGAGGUa--CUGCU---UGUAGC--UGCGGga -5'
9069 5' -54.3 NC_002512.2 + 98665 0.71 0.863027
Target:  5'- gGCCUCCGaccGCG-ACGUCGAgCGCCUg -3'
miRNA:   3'- -CGGAGGUac-UGCuUGUAGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 50290 0.73 0.780013
Target:  5'- ---aCCggGAccCGGACAUCGACGCCCa -3'
miRNA:   3'- cggaGGuaCU--GCUUGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 9151 0.73 0.770882
Target:  5'- aGCgCUCCAUGAggUGGAgGUCGAaGCCCa -3'
miRNA:   3'- -CG-GAGGUACU--GCUUgUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 137313 0.73 0.752275
Target:  5'- cCCUCCcgGcCGcGGCGUCGGCGCCUc -3'
miRNA:   3'- cGGAGGuaCuGC-UUGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 6191 0.75 0.644532
Target:  5'- cGCCggCCAgGACGAugccguUGUCGGCGCCCUu -3'
miRNA:   3'- -CGGa-GGUaCUGCUu-----GUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 136862 0.75 0.664522
Target:  5'- cGCCUCCGUGugGAACcacaGcUGCCCg -3'
miRNA:   3'- -CGGAGGUACugCUUGuag-CuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 112053 0.74 0.684411
Target:  5'- gGCCUCCGUGuccaGGACGUCGGucCGCCg- -3'
miRNA:   3'- -CGGAGGUACug--CUUGUAGCU--GCGGga -5'
9069 5' -54.3 NC_002512.2 + 30451 0.74 0.713913
Target:  5'- gGCCUgcCCAUGGCGccguACAuguUCGAgGCCCUg -3'
miRNA:   3'- -CGGA--GGUACUGCu---UGU---AGCUgCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 73789 0.73 0.748502
Target:  5'- gGCCUUCAgcugcgaguccucGACGAACugcCGGCGCCCg -3'
miRNA:   3'- -CGGAGGUa------------CUGCUUGua-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 13414 0.73 0.752275
Target:  5'- cGCCUCCcUGugGGACGcCGGCuaCCUg -3'
miRNA:   3'- -CGGAGGuACugCUUGUaGCUGcgGGA- -5'
9069 5' -54.3 NC_002512.2 + 83687 0.73 0.752275
Target:  5'- aGCCUCU-UGACGGuCGUCGA-GCCCa -3'
miRNA:   3'- -CGGAGGuACUGCUuGUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 140444 0.73 0.752275
Target:  5'- -aCUCCAUGGgccCGGACGUgaccccgcCGACGCCCg -3'
miRNA:   3'- cgGAGGUACU---GCUUGUA--------GCUGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.