miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 134453 0.66 0.980284
Target:  5'- gGCCUUCAacGACGAccagugucuGCuccuccugcgCGACGCCCUc -3'
miRNA:   3'- -CGGAGGUa-CUGCU---------UGua--------GCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 103452 0.66 0.9774
Target:  5'- cGCCgucgCCGgccgGGCGGgaggaggagaggcgGCGUCGacgGCGCCCg -3'
miRNA:   3'- -CGGa---GGUa---CUGCU--------------UGUAGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 43359 0.66 0.978092
Target:  5'- gGCC-CCGUGcACGcaGAgGUCGACGCUg- -3'
miRNA:   3'- -CGGaGGUAC-UGC--UUgUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 11646 0.66 0.978092
Target:  5'- cGCCgaCCcgGACauAUAUCGGCGCCg- -3'
miRNA:   3'- -CGGa-GGuaCUGcuUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 110000 0.66 0.985884
Target:  5'- uGCaggCCGUGugGGGCGUC-ACGCgCa -3'
miRNA:   3'- -CGga-GGUACugCUUGUAGcUGCGgGa -5'
9069 5' -54.3 NC_002512.2 + 40261 0.66 0.978092
Target:  5'- aGCCgaCCGcGACGAucGCGUgCGGcCGCCCg -3'
miRNA:   3'- -CGGa-GGUaCUGCU--UGUA-GCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 137171 0.66 0.982114
Target:  5'- cGCCcCCcgGACGuccguacGGCGUCGucggucCGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGC-------UUGUAGCu-----GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 81355 0.66 0.981917
Target:  5'- cGCCUCCcucgcggccggGGCGGGCggCGGcCGCCUc -3'
miRNA:   3'- -CGGAGGua---------CUGCUUGuaGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 81805 0.66 0.980284
Target:  5'- cGCCgCCGgggGACGGACGaccgCGGCGCguCCg -3'
miRNA:   3'- -CGGaGGUa--CUGCUUGUa---GCUGCG--GGa -5'
9069 5' -54.3 NC_002512.2 + 130262 0.66 0.984876
Target:  5'- cCCUCCGagggcgacgaccgcGACGAGCG-CGGgGCCCg -3'
miRNA:   3'- cGGAGGUa-------------CUGCUUGUaGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 70842 0.66 0.984876
Target:  5'- cGCC-CCggGACGAGaugccgcggagaaguCGUCGGucCGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCUU---------------GUAGCU--GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 15708 0.66 0.980073
Target:  5'- uCCUCCGcgacgaUGACGGGC-UCGACGuagggguCCCg -3'
miRNA:   3'- cGGAGGU------ACUGCUUGuAGCUGC-------GGGa -5'
9069 5' -54.3 NC_002512.2 + 17502 0.66 0.980284
Target:  5'- cGCCUCCu---CGAucucgACGUCGGCGUCg- -3'
miRNA:   3'- -CGGAGGuacuGCU-----UGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 20677 0.66 0.980284
Target:  5'- ---aCCGUGACGGGCcgCaGGCGCCgCUc -3'
miRNA:   3'- cggaGGUACUGCUUGuaG-CUGCGG-GA- -5'
9069 5' -54.3 NC_002512.2 + 83014 0.66 0.984173
Target:  5'- gGCCUCCG-GGCGGua---GugGCCCc -3'
miRNA:   3'- -CGGAGGUaCUGCUuguagCugCGGGa -5'
9069 5' -54.3 NC_002512.2 + 116766 0.66 0.978092
Target:  5'- cGUCUCCGaggagaggcacGACGucAGCGUCGcCGCCCg -3'
miRNA:   3'- -CGGAGGUa----------CUGC--UUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 85516 0.66 0.982309
Target:  5'- -aCUCgGUGGCGAACAggaCGGCGgUCa -3'
miRNA:   3'- cgGAGgUACUGCUUGUa--GCUGCgGGa -5'
9069 5' -54.3 NC_002512.2 + 6628 0.66 0.984173
Target:  5'- cGCC-CCccGACGAcGCG--GACGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCU-UGUagCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 99221 0.66 0.982309
Target:  5'- cGCCgCCGUGugGGucgugcGCAUCuGGUGCCCc -3'
miRNA:   3'- -CGGaGGUACugCU------UGUAG-CUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 9313 0.66 0.984876
Target:  5'- gGCaCUCCAUcgGGCGGcgcacggccagguagACGgcggUGACGCCCUc -3'
miRNA:   3'- -CG-GAGGUA--CUGCU---------------UGUa---GCUGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.