miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 1736 0.67 0.968702
Target:  5'- cGgCUCCGcGugGAccugagcucgcgccCGUCGGCGCCCa -3'
miRNA:   3'- -CgGAGGUaCugCUu-------------GUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 2940 0.67 0.961035
Target:  5'- gGCCUCCcgcgcggccuUGGCGAGC-UUGAgCGCCUUc -3'
miRNA:   3'- -CGGAGGu---------ACUGCUUGuAGCU-GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 2982 0.7 0.903741
Target:  5'- gGCCUCCuUGGCcc-CcgCGugGCCCg -3'
miRNA:   3'- -CGGAGGuACUGcuuGuaGCugCGGGa -5'
9069 5' -54.3 NC_002512.2 + 4600 0.67 0.973175
Target:  5'- cGCCgcgggCCGcgaGACGGACGccgagGACGCCCUc -3'
miRNA:   3'- -CGGa----GGUa--CUGCUUGUag---CUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 5816 0.68 0.953724
Target:  5'- uCCUCCGUGGa-GAgGUCGcagACGCCCg -3'
miRNA:   3'- cGGAGGUACUgcUUgUAGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 6191 0.75 0.644532
Target:  5'- cGCCggCCAgGACGAugccguUGUCGGCGCCCUu -3'
miRNA:   3'- -CGGa-GGUaCUGCUu-----GUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 6628 0.66 0.984173
Target:  5'- cGCC-CCccGACGAcGCG--GACGCCCg -3'
miRNA:   3'- -CGGaGGuaCUGCU-UGUagCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 7500 0.67 0.973175
Target:  5'- gGCgCUCCAUGAgGAGCca-GA-GCCCg -3'
miRNA:   3'- -CG-GAGGUACUgCUUGuagCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 9151 0.73 0.770882
Target:  5'- aGCgCUCCAUGAggUGGAgGUCGAaGCCCa -3'
miRNA:   3'- -CG-GAGGUACU--GCUUgUAGCUgCGGGa -5'
9069 5' -54.3 NC_002512.2 + 9313 0.66 0.984876
Target:  5'- gGCaCUCCAUcgGGCGGcgcacggccagguagACGgcggUGACGCCCUc -3'
miRNA:   3'- -CG-GAGGUA--CUGCU---------------UGUa---GCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 9718 0.72 0.831844
Target:  5'- aCCUCCucccGACgcaGAGCA-CGACGCCCUu -3'
miRNA:   3'- cGGAGGua--CUG---CUUGUaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 10584 0.67 0.969578
Target:  5'- cCCguggCCGcgGACGAcgaagcgggccacgGCGUCGGCGUCCg -3'
miRNA:   3'- cGGa---GGUa-CUGCU--------------UGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 11646 0.66 0.978092
Target:  5'- cGCCgaCCcgGACauAUAUCGGCGCCg- -3'
miRNA:   3'- -CGGa-GGuaCUGcuUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 12069 0.67 0.964373
Target:  5'- cGCCcgCCGUcGACGAucgggACggCGACGCCg- -3'
miRNA:   3'- -CGGa-GGUA-CUGCU-----UGuaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 12391 0.68 0.957487
Target:  5'- cGCCUUCG-GGCGGcgGCggCGGCGCCg- -3'
miRNA:   3'- -CGGAGGUaCUGCU--UGuaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 13414 0.73 0.752275
Target:  5'- cGCCUCCcUGugGGACGcCGGCuaCCUg -3'
miRNA:   3'- -CGGAGGuACugCUUGUaGCUGcgGGA- -5'
9069 5' -54.3 NC_002512.2 + 15708 0.66 0.980073
Target:  5'- uCCUCCGcgacgaUGACGGGC-UCGACGuagggguCCCg -3'
miRNA:   3'- cGGAGGU------ACUGCUUGuAGCUGC-------GGGa -5'
9069 5' -54.3 NC_002512.2 + 16232 0.67 0.970437
Target:  5'- cGCCUCCGUcauCGucguCGUCGccguCGCCCg -3'
miRNA:   3'- -CGGAGGUAcu-GCuu--GUAGCu---GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 17018 0.66 0.985884
Target:  5'- cGUCUCCGgaggagggGACGcucggagggGACGgaCGGCGCCCg -3'
miRNA:   3'- -CGGAGGUa-------CUGC---------UUGUa-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 17502 0.66 0.980284
Target:  5'- cGCCUCCu---CGAucucgACGUCGGCGUCg- -3'
miRNA:   3'- -CGGAGGuacuGCU-----UGUAGCUGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.