miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 227741 0.71 0.839917
Target:  5'- aCCgCCGUGACGGgggagGCGacgaccgaacgcUCGACGCCCg -3'
miRNA:   3'- cGGaGGUACUGCU-----UGU------------AGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 227307 0.67 0.961035
Target:  5'- cGCCagCAUGGgGGagacGCGcCGGCGCCCg -3'
miRNA:   3'- -CGGagGUACUgCU----UGUaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 225871 0.69 0.921127
Target:  5'- cGUCUCUccGACGcGACuccugCGACGCCCc -3'
miRNA:   3'- -CGGAGGuaCUGC-UUGua---GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 224965 0.67 0.975724
Target:  5'- cGCCgucuacCCGcugGGCGGcgGCggCGGCGCCCUc -3'
miRNA:   3'- -CGGa-----GGUa--CUGCU--UGuaGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 224001 0.7 0.897496
Target:  5'- cGCCgUCCAcgagcGACGAGuCGgaCGACGCCCg -3'
miRNA:   3'- -CGG-AGGUa----CUGCUU-GUa-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 222341 0.66 0.984173
Target:  5'- cGCCUCCAggaggagGAgGAGCGgcaCGGgGCCg- -3'
miRNA:   3'- -CGGAGGUa------CUgCUUGUa--GCUgCGGga -5'
9069 5' -54.3 NC_002512.2 + 222247 0.69 0.909763
Target:  5'- cGUCgCCGUGGCGggUcUCGugauggccuGCGCCCUg -3'
miRNA:   3'- -CGGaGGUACUGCuuGuAGC---------UGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 219684 0.71 0.855515
Target:  5'- cGCCgCCcgagGACGAggaggaGCGUCGGCGCUCg -3'
miRNA:   3'- -CGGaGGua--CUGCU------UGUAGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 219393 0.76 0.574655
Target:  5'- uGCCUCCGcUGGuCGGcccGCcgCGACGCCCa -3'
miRNA:   3'- -CGGAGGU-ACU-GCU---UGuaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 219265 0.68 0.953724
Target:  5'- uGCUcgUCCGgcagggGGCGGACGcCGACGCCg- -3'
miRNA:   3'- -CGG--AGGUa-----CUGCUUGUaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 218216 0.72 0.815182
Target:  5'- cGCCUCgGgccgcGGCGGGCcgCGGCGCCg- -3'
miRNA:   3'- -CGGAGgUa----CUGCUUGuaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 218089 0.71 0.863027
Target:  5'- cCCugUCCGUGgggaaGCGGGCGUCG-CGCCCg -3'
miRNA:   3'- cGG--AGGUAC-----UGCUUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 215506 0.72 0.797884
Target:  5'- cGCCUCCGUGGuCGGucccaACcUCGAuccCGCCCUc -3'
miRNA:   3'- -CGGAGGUACU-GCU-----UGuAGCU---GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 211246 0.66 0.985884
Target:  5'- uGCgUCgA-GGCGGcCGUCGACGCCa- -3'
miRNA:   3'- -CGgAGgUaCUGCUuGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 206157 0.67 0.973175
Target:  5'- gGUCauggCCGUGugGAACcgCGucuCGUCCUg -3'
miRNA:   3'- -CGGa---GGUACugCUUGuaGCu--GCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 203140 0.69 0.909763
Target:  5'- gGCCaucaCCGUGGCGuACAgCGGCGCCg- -3'
miRNA:   3'- -CGGa---GGUACUGCuUGUaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 200192 0.72 0.831844
Target:  5'- uCCUCCGaGACGGACGagcgCGACgaGCCCg -3'
miRNA:   3'- cGGAGGUaCUGCUUGUa---GCUG--CGGGa -5'
9069 5' -54.3 NC_002512.2 + 199613 0.66 0.978092
Target:  5'- uCCUCCAUGGCGccGGCuccgCG-CGUCCg -3'
miRNA:   3'- cGGAGGUACUGC--UUGua--GCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 199260 0.66 0.982309
Target:  5'- aGUCUCUggAUGucgggcggccCGAACAUCcGCGCCCUc -3'
miRNA:   3'- -CGGAGG--UACu---------GCUUGUAGcUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 199190 0.69 0.92329
Target:  5'- gGCCUCCAUGAgguCGuacggguugucguccGACcgCGcCGCCCg -3'
miRNA:   3'- -CGGAGGUACU---GC---------------UUGuaGCuGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.