miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 198378 0.67 0.975724
Target:  5'- gGCCUCCGUGAUcaggcucuGGAcCAUCcuCGUCCUg -3'
miRNA:   3'- -CGGAGGUACUG--------CUU-GUAGcuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 198184 0.69 0.931576
Target:  5'- aCCUCCAcgucGGCGAACAggUCcGCGUCCUc -3'
miRNA:   3'- cGGAGGUa---CUGCUUGU--AGcUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 197122 0.73 0.752275
Target:  5'- cGCCUUCGaGAU---CAUCGGCGCCCUg -3'
miRNA:   3'- -CGGAGGUaCUGcuuGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 196984 0.66 0.982309
Target:  5'- cGUgUCCGacaaccUGGCGGGCGUCGACaaCCa -3'
miRNA:   3'- -CGgAGGU------ACUGCUUGUAGCUGcgGGa -5'
9069 5' -54.3 NC_002512.2 + 193471 0.68 0.949742
Target:  5'- cCCUCCggGACGAGgccCA-CGACGgCCUg -3'
miRNA:   3'- cGGAGGuaCUGCUU---GUaGCUGCgGGA- -5'
9069 5' -54.3 NC_002512.2 + 192925 0.69 0.936458
Target:  5'- cGCCUCCGaugccagggaUGAUGA--GUCGACGCggCCUc -3'
miRNA:   3'- -CGGAGGU----------ACUGCUugUAGCUGCG--GGA- -5'
9069 5' -54.3 NC_002512.2 + 190348 0.68 0.953724
Target:  5'- aCCUCUAcGACGAcggggGCGUCGGCccgGUCCUg -3'
miRNA:   3'- cGGAGGUaCUGCU-----UGUAGCUG---CGGGA- -5'
9069 5' -54.3 NC_002512.2 + 187255 0.68 0.953724
Target:  5'- cCCUCCGcguugaUGGCGGACGUCGccucgaagUGCCCc -3'
miRNA:   3'- cGGAGGU------ACUGCUUGUAGCu-------GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 185277 0.66 0.982309
Target:  5'- cGUCgCCAUGAUGGACcgCuACGCCa- -3'
miRNA:   3'- -CGGaGGUACUGCUUGuaGcUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 183445 0.75 0.644532
Target:  5'- cGUCUCgAUGGCGGucgagaACGUCGGCGCCg- -3'
miRNA:   3'- -CGGAGgUACUGCU------UGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 182207 0.67 0.967505
Target:  5'- cGCCcCCggGugGAACAgcacguucggCGGCGCCa- -3'
miRNA:   3'- -CGGaGGuaCugCUUGUa---------GCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 181076 0.68 0.941112
Target:  5'- aCCUCCuc-GCGAuccucucccuguGCcgCGACGCCCg -3'
miRNA:   3'- cGGAGGuacUGCU------------UGuaGCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 180428 0.71 0.855515
Target:  5'- uCCUCgGUGACGGcGCcccgggCGGCGCCCg -3'
miRNA:   3'- cGGAGgUACUGCU-UGua----GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 180161 0.69 0.915558
Target:  5'- gGCCUCCGUccCGAGCAgguaCGACGCgUg -3'
miRNA:   3'- -CGGAGGUAcuGCUUGUa---GCUGCGgGa -5'
9069 5' -54.3 NC_002512.2 + 177596 0.66 0.980284
Target:  5'- cGUCUCC--GGCGAAUcgaucUCGGCGCUCUu -3'
miRNA:   3'- -CGGAGGuaCUGCUUGu----AGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 176675 0.66 0.978092
Target:  5'- cGCCUCCuggGACuGGCG-CGuCGCCUUg -3'
miRNA:   3'- -CGGAGGua-CUGcUUGUaGCuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 172432 0.67 0.961035
Target:  5'- uCUUCCGUcGCuacagucgccaGAAgAUCGACGCCCUg -3'
miRNA:   3'- cGGAGGUAcUG-----------CUUgUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 170845 0.67 0.964373
Target:  5'- gGCgaCCcgGACGucgagugucGCcUCGACGCCCUc -3'
miRNA:   3'- -CGgaGGuaCUGCu--------UGuAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 162724 0.67 0.973175
Target:  5'- cGUCUCCAccaaaGAUGcguauCAUCGACGCCg- -3'
miRNA:   3'- -CGGAGGUa----CUGCuu---GUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 158949 0.67 0.964373
Target:  5'- gGCCUCUcgGucagcaacggcgGCGAGCGguUCGGCGgCCa -3'
miRNA:   3'- -CGGAGGuaC------------UGCUUGU--AGCUGCgGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.