miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 5' -54.3 NC_002512.2 + 211246 0.66 0.985884
Target:  5'- uGCgUCgA-GGCGGcCGUCGACGCCa- -3'
miRNA:   3'- -CGgAGgUaCUGCUuGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 155595 0.67 0.975724
Target:  5'- uCCUCCGUcgagGACcacggGGACGUgCGGCGCCUg -3'
miRNA:   3'- cGGAGGUA----CUG-----CUUGUA-GCUGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 95554 0.67 0.975724
Target:  5'- aGCUcggCCGcGGCGAGucCGUCGGCGCCg- -3'
miRNA:   3'- -CGGa--GGUaCUGCUU--GUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 137154 1.1 0.005848
Target:  5'- gGCCUCCAUGACGAACAUCGACGCCCUg -3'
miRNA:   3'- -CGGAGGUACUGCUUGUAGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 137921 0.66 0.984173
Target:  5'- cCCUCCG-GACGuGCcgCucCGCCCUg -3'
miRNA:   3'- cGGAGGUaCUGCuUGuaGcuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 94419 0.66 0.984173
Target:  5'- gGCgCUCCAgu-CGGccGCGUCGAaCGCCUg -3'
miRNA:   3'- -CG-GAGGUacuGCU--UGUAGCU-GCGGGa -5'
9069 5' -54.3 NC_002512.2 + 75233 0.66 0.984173
Target:  5'- cGCCgucgCgGUGACGAGCG-CGgccGCGUCCc -3'
miRNA:   3'- -CGGa---GgUACUGCUUGUaGC---UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 106729 0.66 0.982309
Target:  5'- gGCCUCgGcGGCGAuCG-CGGCGCCg- -3'
miRNA:   3'- -CGGAGgUaCUGCUuGUaGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 185277 0.66 0.982309
Target:  5'- cGUCgCCAUGAUGGACcgCuACGCCa- -3'
miRNA:   3'- -CGGaGGUACUGCUUGuaGcUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 40212 0.66 0.978092
Target:  5'- cUCUCCGgu-CGGGCGUUGACGCUg- -3'
miRNA:   3'- cGGAGGUacuGCUUGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 177596 0.66 0.980284
Target:  5'- cGUCUCC--GGCGAAUcgaucUCGGCGCUCUu -3'
miRNA:   3'- -CGGAGGuaCUGCUUGu----AGCUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 199260 0.66 0.982309
Target:  5'- aGUCUCUggAUGucgggcggccCGAACAUCcGCGCCCUc -3'
miRNA:   3'- -CGGAGG--UACu---------GCUUGUAGcUGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 141190 0.66 0.985884
Target:  5'- cCCUCCGc-GCGAACGUCccGCGUCCg -3'
miRNA:   3'- cGGAGGUacUGCUUGUAGc-UGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 199613 0.66 0.978092
Target:  5'- uCCUCCAUGGCGccGGCuccgCG-CGUCCg -3'
miRNA:   3'- cGGAGGUACUGC--UUGua--GCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 222341 0.66 0.984173
Target:  5'- cGCCUCCAggaggagGAgGAGCGgcaCGGgGCCg- -3'
miRNA:   3'- -CGGAGGUa------CUgCUUGUa--GCUgCGGga -5'
9069 5' -54.3 NC_002512.2 + 196984 0.66 0.982309
Target:  5'- cGUgUCCGacaaccUGGCGGGCGUCGACaaCCa -3'
miRNA:   3'- -CGgAGGU------ACUGCUUGUAGCUGcgGGa -5'
9069 5' -54.3 NC_002512.2 + 176675 0.66 0.978092
Target:  5'- cGCCUCCuggGACuGGCG-CGuCGCCUUg -3'
miRNA:   3'- -CGGAGGua-CUGcUUGUaGCuGCGGGA- -5'
9069 5' -54.3 NC_002512.2 + 126404 0.67 0.975724
Target:  5'- gGCC-CCG-GGCGc-CGUCGACGCCg- -3'
miRNA:   3'- -CGGaGGUaCUGCuuGUAGCUGCGGga -5'
9069 5' -54.3 NC_002512.2 + 154804 0.66 0.984173
Target:  5'- aGCCcCCGaaacGGCGccucGACGUCGcCGCCCg -3'
miRNA:   3'- -CGGaGGUa---CUGC----UUGUAGCuGCGGGa -5'
9069 5' -54.3 NC_002512.2 + 92691 0.66 0.984173
Target:  5'- cGCCgcCCAccgGGCGGACcgaCGACGCCg- -3'
miRNA:   3'- -CGGa-GGUa--CUGCUUGua-GCUGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.