miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 224798 0.67 0.910764
Target:  5'- ----cCCGCGCCGAcgccgGCGACGaCGAc -3'
miRNA:   3'- auguaGGCGCGGCUca---UGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 91878 0.67 0.904785
Target:  5'- -cCGUCCG-GCgCGGGcgGCGGCGCGGc -3'
miRNA:   3'- auGUAGGCgCG-GCUCa-UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 180161 0.67 0.904785
Target:  5'- gGCcUCCGUcCCGAgcagGUACGACGCGu- -3'
miRNA:   3'- aUGuAGGCGcGGCU----CAUGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 184972 0.67 0.904785
Target:  5'- cGCGUCCGCcgcgcgGCCGu---CGACGUGGAg -3'
miRNA:   3'- aUGUAGGCG------CGGCucauGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 103395 0.67 0.904785
Target:  5'- cGCGcCCaaCGCCGGGgauccggGCGACGCGAc -3'
miRNA:   3'- aUGUaGGc-GCGGCUCa------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 208568 0.67 0.904785
Target:  5'- gUGCGUCaG-GCCGAGU-CGACGCGc- -3'
miRNA:   3'- -AUGUAGgCgCGGCUCAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 22096 0.67 0.904785
Target:  5'- -uCGUCCG-GCCGGGagACGACGCc-- -3'
miRNA:   3'- auGUAGGCgCGGCUCa-UGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 157517 0.67 0.904785
Target:  5'- -uCAUCaaCGCGUCGGGcUACGugGUGGAc -3'
miRNA:   3'- auGUAG--GCGCGGCUC-AUGCugCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 42632 0.67 0.904174
Target:  5'- gACGUCCGCcaucaacGCgGAGgguucgacgaaGCGACGCGAc -3'
miRNA:   3'- aUGUAGGCG-------CGgCUCa----------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 140892 0.67 0.898582
Target:  5'- gACGUccCCGCGCucCGGGUcgacgacggggACGACGCGGc -3'
miRNA:   3'- aUGUA--GGCGCG--GCUCA-----------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 205038 0.67 0.898582
Target:  5'- cGCGUCCGcCGCCGAc--CGGcCGCGGg -3'
miRNA:   3'- aUGUAGGC-GCGGCUcauGCU-GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 125137 0.67 0.898582
Target:  5'- gACGaCgGCGaCGAGgacgGCGACGCGGAg -3'
miRNA:   3'- aUGUaGgCGCgGCUCa---UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 226753 0.67 0.892158
Target:  5'- gGC-UCCG-GCCGG--ACGACGCGGAg -3'
miRNA:   3'- aUGuAGGCgCGGCUcaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 75544 0.67 0.892158
Target:  5'- gACG-CCGUgGCgGAGgacgACGACGCGGAc -3'
miRNA:   3'- aUGUaGGCG-CGgCUCa---UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 113158 0.67 0.892158
Target:  5'- gGCcucgCCGCgGCCGGGcGgGACGCGAc -3'
miRNA:   3'- aUGua--GGCG-CGGCUCaUgCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 144525 0.67 0.892158
Target:  5'- --gGUCCGCGUgggcgcgguccuCGuGUGCGACGCGc- -3'
miRNA:   3'- augUAGGCGCG------------GCuCAUGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 192564 0.67 0.892158
Target:  5'- cGCGUCCGUgGCCGGGgccuCGGaGCGGAc -3'
miRNA:   3'- aUGUAGGCG-CGGCUCau--GCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 43463 0.67 0.892157
Target:  5'- gGCccagCCG-GCCGAGcACGGCGUGGAa -3'
miRNA:   3'- aUGua--GGCgCGGCUCaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 139252 0.67 0.892157
Target:  5'- gGCcgCgGCGCCGGGUcGCGccgcccggcGCGCGGGg -3'
miRNA:   3'- aUGuaGgCGCGGCUCA-UGC---------UGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 226989 0.67 0.892157
Target:  5'- gGCGUCUuaGCagaGGGUgagGCGGCGCGAGc -3'
miRNA:   3'- aUGUAGGcgCGg--CUCA---UGCUGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.