miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 47543 0.66 0.932408
Target:  5'- aGCAgCCggGCGCgGAGUAC-ACGCGGGa -3'
miRNA:   3'- aUGUaGG--CGCGgCUCAUGcUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 14944 0.66 0.927339
Target:  5'- gUGCGUCCGCgGCCacggGAGgACGAacCGCGGc -3'
miRNA:   3'- -AUGUAGGCG-CGG----CUCaUGCU--GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 158904 0.66 0.927339
Target:  5'- -cCGUCCucggucGCgGCCGAGUACGGCuucgGCGGGg -3'
miRNA:   3'- auGUAGG------CG-CGGCUCAUGCUG----CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 90626 0.66 0.927339
Target:  5'- -----gCGCGCCGG--GCGGCGCGAc -3'
miRNA:   3'- auguagGCGCGGCUcaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 126655 0.66 0.927339
Target:  5'- cGCggCCGuCGaCGGGcgGCGACGCGAGc -3'
miRNA:   3'- aUGuaGGC-GCgGCUCa-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 193867 0.66 0.927339
Target:  5'- gUACAUCggaCGCGgCGGuggACGACGCGGGa -3'
miRNA:   3'- -AUGUAG---GCGCgGCUca-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 103051 0.66 0.927339
Target:  5'- gACGaCCGCGaCGAGcGCGACGaCGGGa -3'
miRNA:   3'- aUGUaGGCGCgGCUCaUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 189544 0.66 0.92682
Target:  5'- gGCGUCCGCggcaucuGCUG-GUGCGACGUc-- -3'
miRNA:   3'- aUGUAGGCG-------CGGCuCAUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 80651 0.66 0.925774
Target:  5'- gGCggCgGCGCCGGGUccgucggucccgcgGCGGCgGCGAc -3'
miRNA:   3'- aUGuaGgCGCGGCUCA--------------UGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 51103 0.66 0.924188
Target:  5'- gAgGUCgGCGCUGaAGUcgaaguacaucgagaACGACGCGAc -3'
miRNA:   3'- aUgUAGgCGCGGC-UCA---------------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 121678 0.66 0.922042
Target:  5'- cACGUCgC-CGCCGAGUGCauaggaGACGUGGc -3'
miRNA:   3'- aUGUAG-GcGCGGCUCAUG------CUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 128273 0.66 0.9215
Target:  5'- cGCGUCCcgGCGCCGGGccgACGGCcgcccgcacgaccGCGGGg -3'
miRNA:   3'- aUGUAGG--CGCGGCUCa--UGCUG-------------CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 137355 0.66 0.916517
Target:  5'- gGCcgCCGCgGCCGGGUAgaucCG-CGCGGu -3'
miRNA:   3'- aUGuaGGCG-CGGCUCAU----GCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 128101 0.66 0.916517
Target:  5'- aGCGcUCCGcCGUCGAGgACGGCGCc-- -3'
miRNA:   3'- aUGU-AGGC-GCGGCUCaUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 94620 0.66 0.916517
Target:  5'- gGCGgcccaggCCuCGUCGAGcGCGGCGCGGAc -3'
miRNA:   3'- aUGUa------GGcGCGGCUCaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 223260 0.66 0.916517
Target:  5'- gGCGUCCGCGUCGucggGgGGCGgGAc -3'
miRNA:   3'- aUGUAGGCGCGGCuca-UgCUGCgCUu -5'
9073 3' -56.6 NC_002512.2 + 218504 0.67 0.913092
Target:  5'- cGCGUCCGaGCCGucggaccccucgucGUcCGACGCGAAc -3'
miRNA:   3'- aUGUAGGCgCGGCu-------------CAuGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 23989 0.67 0.910764
Target:  5'- aACGggucCCGCGagCGGGgacccGCGACGCGAAa -3'
miRNA:   3'- aUGUa---GGCGCg-GCUCa----UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 118192 0.67 0.910764
Target:  5'- -uCAUCCGCgaccccgagGCCGucuGGUGCGACGgGGc -3'
miRNA:   3'- auGUAGGCG---------CGGC---UCAUGCUGCgCUu -5'
9073 3' -56.6 NC_002512.2 + 45520 0.67 0.910764
Target:  5'- aGCGcCCGCGgCGGGcgGCGGCgGCGAc -3'
miRNA:   3'- aUGUaGGCGCgGCUCa-UGCUG-CGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.