Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9073 | 3' | -56.6 | NC_002512.2 | + | 140358 | 0.66 | 0.937248 |
Target: 5'- gUACAUCCGCGCCGAcaacCGGCa---- -3' miRNA: 3'- -AUGUAGGCGCGGCUcau-GCUGcgcuu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 9820 | 0.66 | 0.937248 |
Target: 5'- aGgAUCCGCGCCaGAGUcuCGG-GCGGAg -3' miRNA: 3'- aUgUAGGCGCGG-CUCAu-GCUgCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 138287 | 0.66 | 0.937248 |
Target: 5'- gUGCGUCCGCaGCuCGuGGUGCcGCGCGc- -3' miRNA: 3'- -AUGUAGGCG-CG-GC-UCAUGcUGCGCuu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 82700 | 0.66 | 0.941861 |
Target: 5'- gGCGUCCGUGC-----GCGGCGCGGg -3' miRNA: 3'- aUGUAGGCGCGgcucaUGCUGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 118302 | 0.66 | 0.932408 |
Target: 5'- aAgAUCCGgGCCGAGcgcgcggACGACGaGAGg -3' miRNA: 3'- aUgUAGGCgCGGCUCa------UGCUGCgCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 47543 | 0.66 | 0.932408 |
Target: 5'- aGCAgCCggGCGCgGAGUAC-ACGCGGGa -3' miRNA: 3'- aUGUaGG--CGCGgCUCAUGcUGCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 103051 | 0.66 | 0.927339 |
Target: 5'- gACGaCCGCGaCGAGcGCGACGaCGGGa -3' miRNA: 3'- aUGUaGGCGCgGCUCaUGCUGC-GCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 14944 | 0.66 | 0.927339 |
Target: 5'- gUGCGUCCGCgGCCacggGAGgACGAacCGCGGc -3' miRNA: 3'- -AUGUAGGCG-CGG----CUCaUGCU--GCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 90919 | 0.66 | 0.941861 |
Target: 5'- gGCggCCGCGaaCGGGgcCGGCGCGGc -3' miRNA: 3'- aUGuaGGCGCg-GCUCauGCUGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 107787 | 0.66 | 0.941861 |
Target: 5'- gACGUCaGCGCCGAccucgcGUcCGGCGCGu- -3' miRNA: 3'- aUGUAGgCGCGGCU------CAuGCUGCGCuu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 155384 | 0.66 | 0.941861 |
Target: 5'- gGCggCgGCGCCGGcggGCGAuCGCGGAg -3' miRNA: 3'- aUGuaGgCGCGGCUca-UGCU-GCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 226192 | 0.66 | 0.941861 |
Target: 5'- gACggCCGCGCCGuuaGCG-CGCGGc -3' miRNA: 3'- aUGuaGGCGCGGCucaUGCuGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 104870 | 0.66 | 0.941861 |
Target: 5'- cGCAgcgggCgGCGCCGA---CGGCGCGAc -3' miRNA: 3'- aUGUa----GgCGCGGCUcauGCUGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 228052 | 0.66 | 0.941861 |
Target: 5'- gACGcCCGCGgaCGGcUGCGGCGCGGGa -3' miRNA: 3'- aUGUaGGCGCg-GCUcAUGCUGCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 199982 | 0.66 | 0.941861 |
Target: 5'- cGCGUCCGCGCgcccggCGGGgACGA-GCGGc -3' miRNA: 3'- aUGUAGGCGCG------GCUCaUGCUgCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 141903 | 0.66 | 0.932408 |
Target: 5'- ---cUCCGCGUCGGG-GCGcCGCGGc -3' miRNA: 3'- auguAGGCGCGGCUCaUGCuGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 140892 | 0.67 | 0.898582 |
Target: 5'- gACGUccCCGCGCucCGGGUcgacgacggggACGACGCGGc -3' miRNA: 3'- aUGUA--GGCGCG--GCUCA-----------UGCUGCGCUu -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 226989 | 0.67 | 0.892157 |
Target: 5'- gGCGUCUuaGCagaGGGUgagGCGGCGCGAGc -3' miRNA: 3'- aUGUAGGcgCGg--CUCA---UGCUGCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 139252 | 0.67 | 0.892157 |
Target: 5'- gGCcgCgGCGCCGGGUcGCGccgcccggcGCGCGGGg -3' miRNA: 3'- aUGuaGgCGCGGCUCA-UGC---------UGCGCUU- -5' |
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9073 | 3' | -56.6 | NC_002512.2 | + | 42632 | 0.67 | 0.904174 |
Target: 5'- gACGUCCGCcaucaacGCgGAGgguucgacgaaGCGACGCGAc -3' miRNA: 3'- aUGUAGGCG-------CGgCUCa----------UGCUGCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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