miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 107787 0.66 0.941861
Target:  5'- gACGUCaGCGCCGAccucgcGUcCGGCGCGu- -3'
miRNA:   3'- aUGUAGgCGCGGCU------CAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 47543 0.66 0.932408
Target:  5'- aGCAgCCggGCGCgGAGUAC-ACGCGGGa -3'
miRNA:   3'- aUGUaGG--CGCGgCUCAUGcUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 103051 0.66 0.927339
Target:  5'- gACGaCCGCGaCGAGcGCGACGaCGGGa -3'
miRNA:   3'- aUGUaGGCGCgGCUCaUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 80651 0.66 0.925774
Target:  5'- gGCggCgGCGCCGGGUccgucggucccgcgGCGGCgGCGAc -3'
miRNA:   3'- aUGuaGgCGCGGCUCA--------------UGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 51103 0.66 0.924188
Target:  5'- gAgGUCgGCGCUGaAGUcgaaguacaucgagaACGACGCGAc -3'
miRNA:   3'- aUgUAGgCGCGGC-UCA---------------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 121678 0.66 0.922042
Target:  5'- cACGUCgC-CGCCGAGUGCauaggaGACGUGGc -3'
miRNA:   3'- aUGUAG-GcGCGGCUCAUG------CUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 137355 0.66 0.916517
Target:  5'- gGCcgCCGCgGCCGGGUAgaucCG-CGCGGu -3'
miRNA:   3'- aUGuaGGCG-CGGCUCAU----GCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 141903 0.66 0.932408
Target:  5'- ---cUCCGCGUCGGG-GCGcCGCGGc -3'
miRNA:   3'- auguAGGCGCGGCUCaUGCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 90919 0.66 0.941861
Target:  5'- gGCggCCGCGaaCGGGgcCGGCGCGGc -3'
miRNA:   3'- aUGuaGGCGCg-GCUCauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 226192 0.66 0.941861
Target:  5'- gACggCCGCGCCGuuaGCG-CGCGGc -3'
miRNA:   3'- aUGuaGGCGCGGCucaUGCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 128101 0.66 0.916517
Target:  5'- aGCGcUCCGcCGUCGAGgACGGCGCc-- -3'
miRNA:   3'- aUGU-AGGC-GCGGCUCaUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 140358 0.66 0.937248
Target:  5'- gUACAUCCGCGCCGAcaacCGGCa---- -3'
miRNA:   3'- -AUGUAGGCGCGGCUcau-GCUGcgcuu -5'
9073 3' -56.6 NC_002512.2 + 138287 0.66 0.937248
Target:  5'- gUGCGUCCGCaGCuCGuGGUGCcGCGCGc- -3'
miRNA:   3'- -AUGUAGGCG-CG-GC-UCAUGcUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 82700 0.66 0.941861
Target:  5'- gGCGUCCGUGC-----GCGGCGCGGg -3'
miRNA:   3'- aUGUAGGCGCGgcucaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 30652 0.66 0.937248
Target:  5'- gACAUCgggcUGCGCCGGaucuaccggGCGGCGCGGu -3'
miRNA:   3'- aUGUAG----GCGCGGCUca-------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 155384 0.66 0.941861
Target:  5'- gGCggCgGCGCCGGcggGCGAuCGCGGAg -3'
miRNA:   3'- aUGuaGgCGCGGCUca-UGCU-GCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 104870 0.66 0.941861
Target:  5'- cGCAgcgggCgGCGCCGA---CGGCGCGAc -3'
miRNA:   3'- aUGUa----GgCGCGGCUcauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 9820 0.66 0.937248
Target:  5'- aGgAUCCGCGCCaGAGUcuCGG-GCGGAg -3'
miRNA:   3'- aUgUAGGCGCGG-CUCAu-GCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 14944 0.66 0.927339
Target:  5'- gUGCGUCCGCgGCCacggGAGgACGAacCGCGGc -3'
miRNA:   3'- -AUGUAGGCG-CGG----CUCaUGCU--GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 118302 0.66 0.932408
Target:  5'- aAgAUCCGgGCCGAGcgcgcggACGACGaGAGg -3'
miRNA:   3'- aUgUAGGCgCGGCUCa------UGCUGCgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.