miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 5499 0.77 0.409445
Target:  5'- cGCGUCCGCGCCGGGgu---CGCGAGg -3'
miRNA:   3'- aUGUAGGCGCGGCUCaugcuGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 6621 0.69 0.833291
Target:  5'- gGCGUCC-CGCCccccgACGACGCGGAc -3'
miRNA:   3'- aUGUAGGcGCGGcuca-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 9820 0.66 0.937248
Target:  5'- aGgAUCCGCGCCaGAGUcuCGG-GCGGAg -3'
miRNA:   3'- aUgUAGGCGCGG-CUCAu-GCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 14944 0.66 0.927339
Target:  5'- gUGCGUCCGCgGCCacggGAGgACGAacCGCGGc -3'
miRNA:   3'- -AUGUAGGCG-CGG----CUCaUGCU--GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 17054 0.69 0.816701
Target:  5'- gGCGcCCGCGCCcaaccccgGCGGCGCGGAa -3'
miRNA:   3'- aUGUaGGCGCGGcuca----UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 18522 0.67 0.885515
Target:  5'- aGCAUgCCGCGCCGGGcggucagGCcGCGCGc- -3'
miRNA:   3'- aUGUA-GGCGCGGCUCa------UGcUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 20725 0.68 0.856849
Target:  5'- uUGCGcgCCGUGCCGAcgACGACGUGc- -3'
miRNA:   3'- -AUGUa-GGCGCGGCUcaUGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 22096 0.67 0.904785
Target:  5'- -uCGUCCG-GCCGGGagACGACGCc-- -3'
miRNA:   3'- auGUAGGCgCGGCUCa-UGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 23989 0.67 0.910764
Target:  5'- aACGggucCCGCGagCGGGgacccGCGACGCGAAa -3'
miRNA:   3'- aUGUa---GGCGCg-GCUCa----UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 28246 0.71 0.735041
Target:  5'- gGCcgUCGCGCCgcGAGUACGACGgCGc- -3'
miRNA:   3'- aUGuaGGCGCGG--CUCAUGCUGC-GCuu -5'
9073 3' -56.6 NC_002512.2 + 30652 0.66 0.937248
Target:  5'- gACAUCgggcUGCGCCGGaucuaccggGCGGCGCGGu -3'
miRNA:   3'- aUGUAG----GCGCGGCUca-------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 42632 0.67 0.904174
Target:  5'- gACGUCCGCcaucaacGCgGAGgguucgacgaaGCGACGCGAc -3'
miRNA:   3'- aUGUAGGCG-------CGgCUCa----------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 43463 0.67 0.892157
Target:  5'- gGCccagCCG-GCCGAGcACGGCGUGGAa -3'
miRNA:   3'- aUGua--GGCgCGGCUCaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 43854 0.68 0.86432
Target:  5'- gACggCCGUguuGCCGAGcGCGACGCa-- -3'
miRNA:   3'- aUGuaGGCG---CGGCUCaUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 45520 0.67 0.910764
Target:  5'- aGCGcCCGCGgCGGGcgGCGGCgGCGAc -3'
miRNA:   3'- aUGUaGGCGCgGCUCa-UGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 47543 0.66 0.932408
Target:  5'- aGCAgCCggGCGCgGAGUAC-ACGCGGGa -3'
miRNA:   3'- aUGUaGG--CGCGgCUCAUGcUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 49587 0.68 0.871592
Target:  5'- cGCcgCUGCGCCugucGAGgGCGACGgGAAc -3'
miRNA:   3'- aUGuaGGCGCGG----CUCaUGCUGCgCUU- -5'
9073 3' -56.6 NC_002512.2 + 51103 0.66 0.924188
Target:  5'- gAgGUCgGCGCUGaAGUcgaaguacaucgagaACGACGCGAc -3'
miRNA:   3'- aUgUAGgCGCGGC-UCA---------------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 58117 0.75 0.499106
Target:  5'- cACcUCCGCGaCCGAGaGCGAgGCGAGa -3'
miRNA:   3'- aUGuAGGCGC-GGCUCaUGCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 67977 0.69 0.790634
Target:  5'- gGCGUCCGC-CgGAGgagggcCGGCGCGAGg -3'
miRNA:   3'- aUGUAGGCGcGgCUCau----GCUGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.