miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 136459 1.04 0.00795
Target:  5'- cUACAUCCGCGCCGAGUACGACGCGAAc -3'
miRNA:   3'- -AUGUAGGCGCGGCUCAUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 5499 0.77 0.409445
Target:  5'- cGCGUCCGCGCCGGGgu---CGCGAGg -3'
miRNA:   3'- aUGUAGGCGCGGCUCaugcuGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 212825 0.76 0.45307
Target:  5'- ---uUCCGCGCCGccggGGUugGGCGCGGg -3'
miRNA:   3'- auguAGGCGCGGC----UCAugCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 211284 0.75 0.489725
Target:  5'- uUGCGagUGCGCCGAGUGCGGCauGCGGc -3'
miRNA:   3'- -AUGUagGCGCGGCUCAUGCUG--CGCUu -5'
9073 3' -56.6 NC_002512.2 + 58117 0.75 0.499106
Target:  5'- cACcUCCGCGaCCGAGaGCGAgGCGAGa -3'
miRNA:   3'- aUGuAGGCGC-GGCUCaUGCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 133806 0.75 0.508565
Target:  5'- gACggUCGCGCCGGGUGCGGgGgGAAg -3'
miRNA:   3'- aUGuaGGCGCGGCUCAUGCUgCgCUU- -5'
9073 3' -56.6 NC_002512.2 + 159014 0.74 0.5181
Target:  5'- gGCGUCCGCGCCGGGcggaccgACGAcuucucCGCGGu -3'
miRNA:   3'- aUGUAGGCGCGGCUCa------UGCU------GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 106345 0.74 0.556891
Target:  5'- gACGUCCGCGCCcgccgacucgGAGUACcaGACGaCGAGg -3'
miRNA:   3'- aUGUAGGCGCGG----------CUCAUG--CUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 142273 0.73 0.616438
Target:  5'- -uCGUCCGgGCCGGGgACGGCGuCGAc -3'
miRNA:   3'- auGUAGGCgCGGCUCaUGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 199284 0.72 0.636449
Target:  5'- aACAUCCGCGCCcuccGGUugGugGCc-- -3'
miRNA:   3'- aUGUAGGCGCGGc---UCAugCugCGcuu -5'
9073 3' -56.6 NC_002512.2 + 124625 0.71 0.685295
Target:  5'- gGCGUCgGCGCCuggauccGGGUgcGCGGCGCGGc -3'
miRNA:   3'- aUGUAGgCGCGG-------CUCA--UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 144613 0.71 0.686284
Target:  5'- gAgGUCCGCGCCGcGcuggACGugGCGGc -3'
miRNA:   3'- aUgUAGGCGCGGCuCa---UGCugCGCUu -5'
9073 3' -56.6 NC_002512.2 + 145925 0.71 0.686284
Target:  5'- gGCAUCCGcCGCCGGGacuucuucgaccUGCuGCGCGAc -3'
miRNA:   3'- aUGUAGGC-GCGGCUC------------AUGcUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 148249 0.71 0.696155
Target:  5'- aGCAa-CGCGCCGAGccuggACGugGCGAc -3'
miRNA:   3'- aUGUagGCGCGGCUCa----UGCugCGCUu -5'
9073 3' -56.6 NC_002512.2 + 126723 0.71 0.696155
Target:  5'- -uCGUCCuCGCCGGGcGCGGCGCGu- -3'
miRNA:   3'- auGUAGGcGCGGCUCaUGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 86657 0.71 0.715734
Target:  5'- cGCGguggCCGCGuCCGAGcggACGGCGCGc- -3'
miRNA:   3'- aUGUa---GGCGC-GGCUCa--UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 28246 0.71 0.735041
Target:  5'- gGCcgUCGCGCCgcGAGUACGACGgCGc- -3'
miRNA:   3'- aUGuaGGCGCGG--CUCAUGCUGC-GCuu -5'
9073 3' -56.6 NC_002512.2 + 137539 0.7 0.744571
Target:  5'- cGCGUCCGCGgcgaCGGGUuCGGuCGCGGAa -3'
miRNA:   3'- aUGUAGGCGCg---GCUCAuGCU-GCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 134649 0.7 0.744571
Target:  5'- cACAacgCCGUgGCCGAGUGCGgggccgACGCGAu -3'
miRNA:   3'- aUGUa--GGCG-CGGCUCAUGC------UGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 127662 0.7 0.744571
Target:  5'- gACAga-GCGCCGAGgaccucguCGACGCGAu -3'
miRNA:   3'- aUGUaggCGCGGCUCau------GCUGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.