miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 117422 0.68 0.86432
Target:  5'- -uCAUCCGCuCCGAGcGCGAcCGCGu- -3'
miRNA:   3'- auGUAGGCGcGGCUCaUGCU-GCGCuu -5'
9073 3' -56.6 NC_002512.2 + 17054 0.69 0.816701
Target:  5'- gGCGcCCGCGCCcaaccccgGCGGCGCGGAa -3'
miRNA:   3'- aUGUaGGCGCGGcuca----UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 6621 0.69 0.833291
Target:  5'- gGCGUCC-CGCCccccgACGACGCGGAc -3'
miRNA:   3'- aUGUAGGcGCGGcuca-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 126204 0.69 0.833291
Target:  5'- cGCGUCCGcCGCCcucUGCGACGuCGAGg -3'
miRNA:   3'- aUGUAGGC-GCGGcucAUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 110781 0.68 0.840532
Target:  5'- cGCAgCUGCGCCGAGgcCGcccgcaccuccucGCGCGAc -3'
miRNA:   3'- aUGUaGGCGCGGCUCauGC-------------UGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 81799 0.68 0.841328
Target:  5'- cGCcgCCGcCGCCGGGggacggACGAcCGCGGc -3'
miRNA:   3'- aUGuaGGC-GCGGCUCa-----UGCU-GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 96460 0.68 0.849182
Target:  5'- -cCGUCCGCGuCCGGGUuuuuCGucCGCGGGg -3'
miRNA:   3'- auGUAGGCGC-GGCUCAu---GCu-GCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 20725 0.68 0.856849
Target:  5'- uUGCGcgCCGUGCCGAcgACGACGUGc- -3'
miRNA:   3'- -AUGUa-GGCGCGGCUcaUGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 43854 0.68 0.86432
Target:  5'- gACggCCGUguuGCCGAGcGCGACGCa-- -3'
miRNA:   3'- aUGuaGGCG---CGGCUCaUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 67977 0.69 0.790634
Target:  5'- gGCGUCCGC-CgGAGgagggcCGGCGCGAGg -3'
miRNA:   3'- aUGUAGGCGcGgCUCau----GCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 124749 0.7 0.781661
Target:  5'- cGCGUCCGU--CGGGUGCGGCGaCGAc -3'
miRNA:   3'- aUGUAGGCGcgGCUCAUGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 153295 0.7 0.754006
Target:  5'- gACGUCCGaCGCCGGcGUucaucuCGACGCGc- -3'
miRNA:   3'- aUGUAGGC-GCGGCU-CAu-----GCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 58117 0.75 0.499106
Target:  5'- cACcUCCGCGaCCGAGaGCGAgGCGAGa -3'
miRNA:   3'- aUGuAGGCGC-GGCUCaUGCUgCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 133806 0.75 0.508565
Target:  5'- gACggUCGCGCCGGGUGCGGgGgGAAg -3'
miRNA:   3'- aUGuaGGCGCGGCUCAUGCUgCgCUU- -5'
9073 3' -56.6 NC_002512.2 + 142273 0.73 0.616438
Target:  5'- -uCGUCCGgGCCGGGgACGGCGuCGAc -3'
miRNA:   3'- auGUAGGCgCGGCUCaUGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 124625 0.71 0.685295
Target:  5'- gGCGUCgGCGCCuggauccGGGUgcGCGGCGCGGc -3'
miRNA:   3'- aUGUAGgCGCGG-------CUCA--UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 86657 0.71 0.715734
Target:  5'- cGCGguggCCGCGuCCGAGcggACGGCGCGc- -3'
miRNA:   3'- aUGUa---GGCGC-GGCUCa--UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 28246 0.71 0.735041
Target:  5'- gGCcgUCGCGCCgcGAGUACGACGgCGc- -3'
miRNA:   3'- aUGuaGGCGCGG--CUCAUGCUGC-GCuu -5'
9073 3' -56.6 NC_002512.2 + 127662 0.7 0.744571
Target:  5'- gACAga-GCGCCGAGgaccucguCGACGCGAu -3'
miRNA:   3'- aUGUaggCGCGGCUCau------GCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 134649 0.7 0.744571
Target:  5'- cACAacgCCGUgGCCGAGUGCGgggccgACGCGAu -3'
miRNA:   3'- aUGUa--GGCG-CGGCUCAUGC------UGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.