miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 94620 0.66 0.916517
Target:  5'- gGCGgcccaggCCuCGUCGAGcGCGGCGCGGAc -3'
miRNA:   3'- aUGUa------GGcGCGGCUCaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 228052 0.66 0.941861
Target:  5'- gACGcCCGCGgaCGGcUGCGGCGCGGGa -3'
miRNA:   3'- aUGUaGGCGCg-GCUcAUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 199982 0.66 0.941861
Target:  5'- cGCGUCCGCGCgcccggCGGGgACGA-GCGGc -3'
miRNA:   3'- aUGUAGGCGCG------GCUCaUGCUgCGCUu -5'
9073 3' -56.6 NC_002512.2 + 126655 0.66 0.927339
Target:  5'- cGCggCCGuCGaCGGGcgGCGACGCGAGc -3'
miRNA:   3'- aUGuaGGC-GCgGCUCa-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 90626 0.66 0.927339
Target:  5'- -----gCGCGCCGG--GCGGCGCGAc -3'
miRNA:   3'- auguagGCGCGGCUcaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 90490 0.66 0.941861
Target:  5'- gGCGUCCucgacgggaucgGgGCCGAGgcCGGCgGCGGAc -3'
miRNA:   3'- aUGUAGG------------CgCGGCUCauGCUG-CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 169575 0.66 0.932408
Target:  5'- gGCGucUCCGCGuCCGccaGGUACGACGacaGGu -3'
miRNA:   3'- aUGU--AGGCGC-GGC---UCAUGCUGCg--CUu -5'
9073 3' -56.6 NC_002512.2 + 193867 0.66 0.927339
Target:  5'- gUACAUCggaCGCGgCGGuggACGACGCGGGa -3'
miRNA:   3'- -AUGUAG---GCGCgGCUca-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 223260 0.66 0.916517
Target:  5'- gGCGUCCGCGUCGucggGgGGCGgGAc -3'
miRNA:   3'- aUGUAGGCGCGGCuca-UgCUGCgCUu -5'
9073 3' -56.6 NC_002512.2 + 208568 0.67 0.904785
Target:  5'- gUGCGUCaG-GCCGAGU-CGACGCGc- -3'
miRNA:   3'- -AUGUAGgCgCGGCUCAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 136459 1.04 0.00795
Target:  5'- cUACAUCCGCGCCGAGUACGACGCGAAc -3'
miRNA:   3'- -AUGUAGGCGCGGCUCAUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 219116 0.66 0.937248
Target:  5'- cUACGccuaCCGCGgCGGGgccgACGACGCGc- -3'
miRNA:   3'- -AUGUa---GGCGCgGCUCa---UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 113689 0.66 0.94141
Target:  5'- gACGUUgGCGCCGAagagcaucuuguaGUGgguccCGACGCGGg -3'
miRNA:   3'- aUGUAGgCGCGGCU-------------CAU-----GCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 189544 0.66 0.92682
Target:  5'- gGCGUCCGCggcaucuGCUG-GUGCGACGUc-- -3'
miRNA:   3'- aUGUAGGCG-------CGGCuCAUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 128273 0.66 0.9215
Target:  5'- cGCGUCCcgGCGCCGGGccgACGGCcgcccgcacgaccGCGGGg -3'
miRNA:   3'- aUGUAGG--CGCGGCUCa--UGCUG-------------CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 149837 0.66 0.932408
Target:  5'- aGCGacCCGCGCgaCGAGgACGACGaCGAAa -3'
miRNA:   3'- aUGUa-GGCGCG--GCUCaUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 224798 0.67 0.910764
Target:  5'- ----cCCGCGCCGAcgccgGCGACGaCGAc -3'
miRNA:   3'- auguaGGCGCGGCUca---UGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 184972 0.67 0.904785
Target:  5'- cGCGUCCGCcgcgcgGCCGu---CGACGUGGAg -3'
miRNA:   3'- aUGUAGGCG------CGGCucauGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 126335 0.66 0.932408
Target:  5'- gGCcgCCGCGuCCGGGacgggcgcgcACGACGCGu- -3'
miRNA:   3'- aUGuaGGCGC-GGCUCa---------UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 158904 0.66 0.927339
Target:  5'- -cCGUCCucggucGCgGCCGAGUACGGCuucgGCGGGg -3'
miRNA:   3'- auGUAGG------CG-CGGCUCAUGCUG----CGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.